Evidence map›Paper›PMID 26438296›Full record

ArticleG3 (Bethesda, Md.)2015

Sleeping Beauty Transposon Mutagenesis as a Tool for Gene Discovery in the NOD Mouse Model of Type 1 Diabetes.

Colleen M Elso, Edward P F Chu, May A Alsayb, Leanne Mackin, Sean T Ivory, Michelle P Ashton, Stefan Bröer, Pablo A Silveira, Thomas C Brodnicki

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Colleen M ElsoImmunology and Diabetes Unit, St. Vincent's Institute, Fitzroy, Victoria 3065, Australia.
Edward P F ChuImmunology and Diabetes Unit, St. Vincent's Institute, Fitzroy, Victoria 3065, Australia Department of Medicine, University of Melbourne, Parkville, Victoria 3010, Australia.
May A AlsaybImmunology and Diabetes Unit, St. Vincent's Institute, Fitzroy, Victoria 3065, Australia Department of Medicine, University of Melbourne, Parkville, Victoria 3010, Australia.
Leanne MackinImmunology and Diabetes Unit, St. Vincent's Institute, Fitzroy, Victoria 3065, Australia.
Sean T IvoryImmunology and Diabetes Unit, St. Vincent's Institute, Fitzroy, Victoria 3065, Australia.
Michelle P AshtonImmunology and Diabetes Unit, St. Vincent's Institute, Fitzroy, Victoria 3065, Australia Department of Medicine, University of Melbourne, Parkville, Victoria 3010, Australia.
Stefan BröerResearch School of Biology, The Australian National University, Canberra, ACT 2601, Australia.
Pablo A SilveiraDendritic Cell Research, ANZAC Research Institute, Concord, New South Wales 2139, Australia.
Thomas C BrodnickiImmunology and Diabetes Unit, St. Vincent's Institute, Fitzroy, Victoria 3065, Australia Department of Medicine, University of Melbourne, Parkville, Victoria 3010, Australia tbrodnicki@svi.edu.au.
St Vincents Institute of Medical Research · AUAnzac Research Institute · AUAustralian National University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A number of different strategies have been used to identify genes for which genetic variation contributes to type 1 diabetes (T1D) pathogenesis. Genetic studies in humans have identified >40 loci that affect the risk for developing T1D, but the underlying causative alleles are often difficult to pinpoint or have subtle biological effects. A complementary strategy to identifying "natural" alleles in the human population is to engineer "artificial" alleles within inbred mouse strains and determine their effect on T1D incidence. We describe the use of the Sleeping Beauty (SB) transposon mutagenesis system in the nonobese diabetic (NOD) mouse strain, which harbors a genetic background predisposed to developing T1D. Mutagenesis in this system is random, but a green fluorescent protein (GFP)-polyA gene trap within the SB transposon enables early detection of mice harboring transposon-disrupted genes. The SB transposon also acts as a molecular tag to, without additional breeding, efficiently identify mutated genes and prioritize mutant mice for further characterization. We show here that the SB transposon is functional in NOD mice and can produce a null allele in a novel candidate gene that increases diabetes incidence. We propose that SB transposon mutagenesis could be used as a complementary strategy to traditional methods to help identify genes that, when disrupted, affect T1D pathogenesis.

Indexed as

DNA Transposable ElementsGenetic Association StudiesMutagenesis, InsertionalAnimalsChromosome BreakpointsDiabetes Mellitus, Type 1Disease Models, AnimalFemaleGene DosageGene ExpressionGenes, ReporterGenetic VectorsMaleMiceMice, Inbred NODMice, TransgenicDNA Transposable Elementsamino acid transporterforward geneticsreverse geneticsSerinc1Slc16a10

Identifiers

PMID26438296
PMCPMC4683661
OpenAlexW2240782884

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.