Evidence map›Paper›PMID 26438291›Full record

ArticleG3 (Bethesda, Md.)2015

Joint Transcriptomic and Metabolomic Analyses Reveal Changes in the Primary Metabolism and Imbalances in the Subgenome Orchestration in the Bread Wheat Molecular Response to Fusarium graminearum.

Thomas Nussbaumer, Benedikt Warth, Sapna Sharma, Christian Ametz, Christoph Bueschl, Alexandra Parich, Matthias Pfeifer, Gerald Siegwart, Barbara Steiner, Marc Lemmens and 5 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Comprehensive Transcriptomic and Metabolic Profiling ofInternational journal of molecular sciences · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Linking Multi-Omics to Wheat Resistance Types toInternational journal of molecular sciences · 2022
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Germplasms, genetics and genomics for better control of disastrous wheat Fusarium head blight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Thomas NussbaumerPlant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, D-85764, Germany.
Benedikt WarthCenter for Analytical Chemistry (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A- 3430, Austria.
Sapna SharmaPlant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, D-85764, Germany.
Christian AmetzInstitute for Biotechnology in Plant Production (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A-3430, Austria.
Christoph BueschlCenter for Analytical Chemistry (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A- 3430, Austria.
Alexandra ParichCenter for Analytical Chemistry (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A- 3430, Austria.
Matthias PfeiferPlant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, D-85764, Germany.
Gerald SiegwartInstitute for Biotechnology in Plant Production (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A-3430, Austria.
Barbara SteinerInstitute for Biotechnology in Plant Production (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A-3430, Austria.
Marc LemmensInstitute for Biotechnology in Plant Production (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A-3430, Austria.
Rainer SchuhmacherCenter for Analytical Chemistry (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A- 3430, Austria.
Hermann BuerstmayrInstitute for Biotechnology in Plant Production (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A-3430, Austria.
Klaus F X MayerPlant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, D-85764, Germany.
Karl G KuglerPlant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, D-85764, Germany karl.kugler@helmholtz-muenchen.de wolfgang.schweiger@boku.ac.at.
Wolfgang SchweigerInstitute for Biotechnology in Plant Production (IFA-Tulln), BOKU - University of Natural Resources and Life Sciences, Tulln, A-3430, Austria karl.kugler@helmholtz-muenchen.de wolfgang.schweiger@boku.ac.at.
BOKU University · ATHelmholtz Zentrum München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium head blight is a prevalent disease of bread wheat (Triticum aestivum L.), which leads to considerable losses in yield and quality. Quantitative resistance to the causative fungus Fusarium graminearum is poorly understood. We integrated transcriptomics and metabolomics data to dissect the molecular response to the fungus and its main virulence factor, the toxin deoxynivalenol in near-isogenic lines segregating for two resistance quantitative trait loci, Fhb1 and Qfhs.ifa-5A. The data sets portrait rearrangements in the primary metabolism and the translational machinery to counter the fungus and the effects of the toxin and highlight distinct changes in the metabolism of glutamate in lines carrying Qfhs.ifa-5A. These observations are possibly due to the activity of two amino acid permeases located in the quantitative trait locus confidence interval, which may contribute to increased pathogen endurance. Mapping to the highly resolved region of Fhb1 reduced the list of candidates to few genes that are specifically expressed in presence of the quantitative trait loci and in response to the pathogen, which include a receptor-like protein kinase, a protein kinase, and an E3 ubiquitin-protein ligase. On a genome-scale level, the individual subgenomes of hexaploid wheat contribute differentially to defense. In particular, the D subgenome exhibited a pronounced response to the pathogen and contributed significantly to the overall defense response.

Indexed as

Basal MetabolismGenomicsMetabolomeTranscriptomeComputational BiologyDisease ResistanceFusariumGene Expression ProfilingGene Expression Regulation, PlantGlutamic AcidHost-Pathogen InteractionsMetabolic Networks and PathwaysMetabolomicsPlant DiseasesQuantitative Trait LociRNA Ligase (ATP)deoxynivalenolGlutamic AcidRNA Ligase (ATP)TrichothecenesdeoxynivalenolFhb1Fusarium head blightQfhs.ifa-5Aresistance QTL

Identifiers

PMID26438291
PMCPMC4683631
OpenAlexW2245618035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.