Evidence map›Paper›PMID 26438104›Full record

ArticleBMC microbiology2015

Characterising atypical Candida albicans clinical isolates from six third-level hospitals in Bogotá, Colombia.

Giovanni Rodríguez-Leguizamón, Alessandro Fiori, Luisa F López, Beatriz L Gómez, Claudia M Parra-Giraldo, Arley Gómez-López, Carlos F Suárez, Andrés Ceballos, Patrick Van Dijck, Manuel A Patarroyo

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

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  9. Robust, Comprehensive Molecular, and Phenotypical Characterisation of AtypicalFrontiers in cellular and infection microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Giovanni Rodríguez-LeguizamónSchool of Medicine and Health Sciences, Universidad del Rosario, Bogotá, Colombia. giovanni.rodriguez@urosario.edu.co.
Alessandro FioriVIB Department of Molecular Microbiology, Leuven, Belgium. alessandro.fiori@mmbio.vib-kuleuven.be.
Luisa F LópezMedical and Experimental Mycology Unit, Corporación para las Investigaciones Biológicas (CIB), Medellín, Colombia. lufe114@yahoo.com.mx.
Beatriz L GómezSchool of Medicine and Health Sciences, Universidad del Rosario, Bogotá, Colombia. beatrizlgomez@hotmail.com.
Claudia M Parra-GiraldoInfectious Diseases Research Group, Microbiology Department, Pontificia Universidad Javeriana, Bogotá, Colombia. claudia.parra@javeriana.edu.co.
Arley Gómez-LópezMolecular Biology and Immunology Department, Fundación Instituto de Inmunología de Colombia (FIDIC), Bogotá, Colombia. arley.gomez.lo2@gmail.com.
Carlos F SuárezSchool of Medicine and Health Sciences, Universidad del Rosario, Bogotá, Colombia. cfsuarez@fidic.org.co.
Andrés CeballosInfectious Diseases Research Group, Microbiology Department, Pontificia Universidad Javeriana, Bogotá, Colombia. andress1224@hotmail.com.
Patrick Van DijckVIB Department of Molecular Microbiology, Leuven, Belgium. patrick.vandijck@mmbio.vib-kuleuven.be.
Manuel A PatarroyoSchool of Medicine and Health Sciences, Universidad del Rosario, Bogotá, Colombia. mapatarr.fidic@gmail.com.
Universidad del Rosario · COFundación Instituto de Inmunología de Colombia · COPontificia Universidad Javeriana · COCorporación para Investigaciones Biológicas · COVIB-KU Leuven Center for Cancer Biology · BEVIB-KU Leuven Center for Microbiology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCandida species are the most frequently found fungal pathogens causing nosocomial disease in a hospital setting. Such species must be correctly identified to ensure that appropriate control measures are taken and that suitable treatment is given for each species. Candida albicans is causing most fungal disease burden worldwide; the challenge lies in differentiating it from emerging atypical, minor and related species such as Candida dubliniensis and Candida africana. The purpose of this study was to compare identification based on MALDI-TOF MS to standard identification systems using a set of nosocomial isolates.

methodsEleven nosocomial samples were collected from 6 third-level hospitals in Bogotá, Colombia. All the samples were identified by combining MALDI-TOF MS with morphological characters, carbohydrate assimilation and molecular markers (D1/D2 and HWP1).

resultsThe present work describes the first collection of atypical Colombian Candida clinical isolates; these were identified as Candida albicans/Candida africana by their MALDI-TOF MS profile. Phenotypical characteristics showed that they were unable to produce chlamydospores, assimilate trehalose, glucosamine, N- acetyl-glucosamine and barely grew at 42 °C, as would be expected for Candida africana. The molecular identification of the D1/D2 region of large subunit ribosomal RNA and HWP1 hyphal cell wall protein 1 sequences from these isolates was consistent with those for Candida albicans. The mass spectra obtained by MALDI-TOF MS were analysed by multi-dimensional scaling (MDS) and cluster analysis, differences being revealed between Candida albicans, Candida africana, Candida dubliniensis reference spectra and two clinical isolate groups which clustered according to the clinical setting, one of them being clearly related to C. albicans.

conclusionThis study highlights the importance of using MALDI-TOF MS in combination with morphology, substrate assimilation and molecular markers for characterising Candida albicans-related and atypical C. albicans species, thereby overcoming conventional identification methods. This is the first report of hospital-obtained isolates of this type in Colombia; the approach followed might be useful for gathering knowledge regarding local epidemiology which could, in turn, have an impact on clinical management. The findings highlight the complexity of distinguishing between typical and atypical Candida albicans isolates in hospitals.

Indexed as

AdolescentAdultAgedAged, 80 and overCandida albicansCandidiasisColombiaCross InfectionDNA, FungalDNA, RibosomalFemaleHumansInfantMaleMiddle AgedMycological Typing TechniquesDNA, FungalDNA, RibosomalRNA, RibosomalRNA, ribosomal, 26S

Identifiers

PMID26438104
PMCPMC4594647
OpenAlexW2151513342

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.