Evidence map›Paper›PMID 26437366›Full record

ArticleNature medicine2015

Loss of BAP1 function leads to EZH2-dependent transformation.

Lindsay M LaFave, Wendy Béguelin, Richard Koche, Matt Teater, Barbara Spitzer, Alan Chramiec, Efthymia Papalexi, Matthew D Keller, Todd Hricik, Katerina Konstantinoff and 21 more

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 230 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
230citing papers in PubMed, 2 pooled it
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

230 citing papers in PubMed, 2 syntheses or guidelines pooled it, 393 citations in OpenAlex.

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170 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors at 4 institutions in 1 country.

Lindsay M LaFaveHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Wendy BéguelinDepartment of Hematology/Oncology, Weill Cornell Medical College, New York, New York, USA.
Richard KocheThe Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Matt TeaterDepartment of Hematology/Oncology, Weill Cornell Medical College, New York, New York, USA.
Barbara SpitzerDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Alan ChramiecThe Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Efthymia PapalexiHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Matthew D KellerHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Todd HricikHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Katerina KonstantinoffHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Jean-Baptiste MicolHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Benjamin DurhamHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Sarah K KnutsonEpizyme, Inc., Cambridge, Massachusetts, USA.
John E CampbellEpizyme, Inc., Cambridge, Massachusetts, USA.
Gil BlumChemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Xinxu ShiChemical Synthesis Core, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Emma H DoudProteomics Center of Excellence, Northwestern University, Evanston, Illinois, USA.
Andrei V KrivtsovThe Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Young Rock ChungHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Inna KhodosAnti-Tumor Assessment Core, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Elisa de StanchinaAnti-Tumor Assessment Core, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Ouathek OuerfelliChemical Synthesis Core, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Prasad S AdusumilliDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID http://orcid.org/0000-0002-1699-2046
Paul M ThomasProteomics Center of Excellence, Northwestern University, Evanston, Illinois, USA.
Neil L KelleherProteomics Center of Excellence, Northwestern University, Evanston, Illinois, USA.
Minkui LuoChemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Heike KeilhackEpizyme, Inc., Cambridge, Massachusetts, USA.
Omar Abdel-WahabHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Ari MelnickDepartment of Hematology/Oncology, Weill Cornell Medical College, New York, New York, USA.
Scott A ArmstrongThe Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Ross L LevineHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Memorial Sloan Kettering Cancer Center · USCornell University · USEpizyme (United States) · USNorthwestern University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Clinical and Translational Science CenterUL1TR000457 · NCATS · WEILL MEDICAL COLL OF CORNELL UNIV · PI IMPERATO-MCGINLEY, JULIANNE L · 2012 to 2016
$46.0M
Role of TET2 mutations in malignant transformation and acute myeloid leukemiaR01CA173636 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI AIFANTIS, IANNIS, LEVINE, ROSS L · 2013 to 2022
$6.3M
Targeting to Epigenetic Modications in ALLR01CA176745 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ARMSTRONG, SCOTT A, QI, JUN · 2012 to 2022
$4.2M
Profile substrates and inhibitors of protein lysine methyltransferaseR01GM096056 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI LUO, MINKUI · 2011 to 2018
$3.2M
Targeting EZH2 in Germinal Center Derived B-Cell LymphomaR01CA187109 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MELNICK, ARI M. · 2014 to 2017
$1.8M
Interrogating Functions of Protein Methyltransferases with Chemical ToolsR01GM120570 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI LUO, MINKUI · 2016 to 2019
$1.8M
Genetic Dissection of Acute Myeloid Leukemia.R01CA169784 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS, LEVINE, ROSS L · 2014 to 2018
$1.8M
Investigation of the Role of BAP1 in Normal and Malignant HematopoiesisF31CA180642 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI LAFAVE, LINDSAY MARIE · 2013 to 2014
$85k
NCATS NIH HHS UL1 TR000457NCI NIH HHS CA172636NCI NIH HHS F31 CA180642NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA060553NCI NIH HHS R01 CA169784NCI NIH HHS R01 CA173636NCI NIH HHS R01 CA187109NIGMS NIH HHS 2R01GM096056NIGMS NIH HHS R01 GM096056NIGMS NIH HHS R01 GM120570
6 · The paper itself

Abstract

The tumor suppressors BAP1 and ASXL1 interact to form a polycomb deubiquitinase complex that removes monoubiquitin from histone H2A lysine 119 (H2AK119Ub). However, BAP1 and ASXL1 are mutated in distinct cancer types, consistent with independent roles in regulating epigenetic state and malignant transformation. Here we demonstrate that Bap1 loss in mice results in increased trimethylated histone H3 lysine 27 (H3K27me3), elevated enhancer of zeste 2 polycomb repressive complex 2 subunit (Ezh2) expression, and enhanced repression of polycomb repressive complex 2 (PRC2) targets. These findings contrast with the reduction in H3K27me3 levels seen with Asxl1 loss. Conditional deletion of Bap1 and Ezh2 in vivo abrogates the myeloid progenitor expansion induced by Bap1 loss alone. Loss of BAP1 results in a marked decrease in H4K20 monomethylation (H4K20me1). Consistent with a role for H4K20me1 in the transcriptional regulation of EZH2, expression of SETD8-the H4K20me1 methyltransferase-reduces EZH2 expression and abrogates the proliferation of BAP1-mutant cells. Furthermore, mesothelioma cells that lack BAP1 are sensitive to EZH2 pharmacologic inhibition, suggesting a novel therapeutic approach for BAP1-mutant malignancies.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsBlotting, WesternCell Line, TumorChromatin ImmunoprecipitationEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticGene Knockout TechniquesHEK293 CellsHistone CodeHistone-Lysine N-MethyltransferaseHistonesHumansImmunoprecipitationLeukemiaMesotheliomaASXL1 protein, humanAsxl1 protein, mouseBAP1 protein, humanBAP1 protein, mouseEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanEzh2 protein, mouseHistone-Lysine N-MethyltransferaseHistonesKMT5A protein, humanPolycomb Repressive Complex 2Repressor ProteinsTumor Suppressor ProteinsUbiquitin Thiolesterase

Identifiers

PMID26437366
PMCPMC4636469
OpenAlexW2113035823

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.