Evidence map›Paper›PMID 26437257›Full record

ArticlePloS one2015

Clinical and Molecular Characterization of Brazilian Patients Suspected to Have Lynch Syndrome.

Felipe Carneiro da Silva, José Roberto de Oliveira Ferreira, Giovana Tardin Torrezan, Márcia Cristina Pena Figueiredo, Érika Maria Monteiro Santos, Wilson Toshihiko Nakagawa, Rafael Canfield Brianese, Ligia Petrolini de Oliveira, Maria Dirlei Begnani, Samuel Aguiar-Junior and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
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  14. Prevalence and spectrum ofHereditary cancer in clinical practice · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Felipe Carneiro da SilvaLaboratory of Genomics and Molecular Biology, International Research Center/CIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
José Roberto de Oliveira FerreiraLaboratory of Genomics and Molecular Biology, International Research Center/CIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Giovana Tardin TorrezanLaboratory of Genomics and Molecular Biology, International Research Center/CIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Márcia Cristina Pena FigueiredoLaboratory of Genomics and Molecular Biology, International Research Center/CIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Érika Maria Monteiro SantosDepartment of Colorectal Tumors, A. C. Camargo Cancer Center, São Paulo, Brazil.
Wilson Toshihiko NakagawaDepartment of Colorectal Tumors, A. C. Camargo Cancer Center, São Paulo, Brazil.
Rafael Canfield BrianeseLaboratory of Genomics and Molecular Biology, International Research Center/CIPE-A. C. Camargo Cancer Center, São Paulo, Brazil.
Ligia Petrolini de OliveiraDepartment of Colorectal Tumors, A. C. Camargo Cancer Center, São Paulo, Brazil.
Maria Dirlei BegnaniAnatomic Pathology Department, AC Camargo Cancer Center, São Paulo, Brazil.
Samuel Aguiar-JuniorDepartment of Colorectal Tumors, A. C. Camargo Cancer Center, São Paulo, Brazil.
Benedito Mauro RossiDepartment of Colorectal Tumors, A. C. Camargo Cancer Center, São Paulo, Brazil.
Fábio de Oliveira FerreiraDepartment of Colorectal Tumors, A. C. Camargo Cancer Center, São Paulo, Brazil.
Dirce Maria CarraroLaboratory of Genomics and Molecular Biology, International Research Center/CIPE-A. C. Camargo Cancer Center, São Paulo, Brazil; National Institute of Science and Technology in Oncogenomics (INCITO), Brazil.
AC Camargo Hospital · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lynch syndrome (LS) accounts for 3-5% of all colorectal cancers (CRC) and is inherited in an autosomal dominant fashion. This syndrome is characterized by early CRC onset, high incidence of tumors in the ascending colon, excess of synchronous/metachronous tumors and extra-colonic tumors. Nowadays, LS is regarded of patients who carry deleterious germline mutations in one of the five mismatch repair genes (MMR), mostly in MLH1 and MSH2, but also in MSH6, PMS1 and PMS2. To comprehensively characterize 116 Brazilian patients suspected for LS, we assessed the frequency of germline mutations in the three minor genes MSH6, PMS1 and PMS2 in 82 patients negative for point mutations in MLH1 and MSH2. We also assessed large genomic rearrangements by MLPA for detecting copy number variations (CNVs) in MLH1, MSH2 and MSH6 generating a broad characterization of MMR genes. The complete analysis of the five MMR genes revealed 45 carriers of pathogenic mutations, including 25 in MSH2, 15 in MLH1, four in MSH6 and one in PMS2. Eleven novel pathogenic mutations (6 in MSH2, 4 in MSH6 and one in PMS2), and 11 variants of unknown significance (VUS) were found. Mutations in the MLH1 and MSH2 genes represented 89% of all mutations (40/45), whereas the three MMR genes (MSH6, PMS1 and PMS2) accounted for 11% (5/45). We also investigated the MLH1 p.Leu676Pro VUS located in the PMS2 interaction domain and our results revealed that this variant displayed no defective function in terms of cellular location and heterodimer interaction. Additionally, we assessed the tumor phenotype of a subset of patients and also the frequency of CRC and extra-colonic tumors in 2,365 individuals of the 116 families, generating the first comprehensive portrait of the genetic and clinical aspects of patients suspected of LS in a Brazilian cohort.

Indexed as

Germ-Line MutationAdenosine TriphosphatasesAdolescentAdultBrazilColorectal Neoplasms, Hereditary NonpolyposisDNA-Binding ProteinsDNA Copy Number VariationsDNA Mismatch RepairDNA Repair EnzymesFemaleHumansMiddle AgedMismatch Repair Endonuclease PMS2MutL ProteinsNeoplasm ProteinsAdenosine TriphosphatasesDNA-Binding ProteinsDNA Repair EnzymesG-T mismatch-binding proteinMismatch Repair Endonuclease PMS2MutL ProteinsNeoplasm ProteinsPMS1 protein, humanPMS2 protein, human

Identifiers

PMID26437257
PMCPMC4593564
OpenAlexW2221401781

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.