Evidence map›Paper›PMID 26437079›Full record

ArticlePloS one2015

The SET Domain Is Essential for Metnase Functions in Replication Restart and the 5' End of SS-Overhang Cleavage.

Hyun-Suk Kim, Sung-Kyung Kim, Robert Hromas, Suk-Hee Lee

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Cellular Responses to Widespread DNA Replication Stress.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hyun-Suk KimDepartment of Biochemistry & Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.
Sung-Kyung KimDepartment of Biochemistry & Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.
Robert HromasDepartment of Medicine, University of Florida and Shands Health Care System, Gainesville, Florida, United States of America.
Suk-Hee LeeDepartment of Biochemistry & Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana, United States of America; Indiana University Simon Cancer Center, Indianapolis, Indiana, United States of America.

Funding

Non-Homologous End Joining Repair in HumansR01CA151367 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI LEE, SUK-HEE · 2011 to 2015
$1.6M
Mechanisms for Chromosomal TranslocationsR01GM109645 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HROMAS, ROBERT A · 2015 to 2018
$1.2M
NCI NIH HHS R01 CA151367NIGMS NIH HHS R01 GM109645
6 · The paper itself

Abstract

Metnase (also known as SETMAR) is a chimeric SET-transposase protein that plays essential role(s) in non-homologous end joining (NHEJ) repair and replication fork restart. Although the SET domain possesses histone H3 lysine 36 dimethylation (H3K36me2) activity associated with an improved association of early repair components for NHEJ, its role in replication restart is less clear. Here we show that the SET domain is necessary for the recovery from DNA damage at the replication forks following hydroxyurea (HU) treatment. Cells overexpressing the SET deletion mutant caused a delay in fork restart after HU release. Our In vitro study revealed that the SET domain but not the H3K36me2 activity is required for the 5' end of ss-overhang cleavage with fork and non-fork DNA without affecting the Metnase-DNA interaction. Together, our results suggest that the Metnase SET domain has a positive role in restart of replication fork and the 5' end of ss-overhang cleavage, providing a new insight into the functional interaction of the SET and the transposase domains.

Indexed as

Base SequenceDNA DamageDNA End-Joining RepairDNA ReplicationDNA, Single-StrandedHEK293 CellsHistone-Lysine N-MethyltransferaseHistonesHumansHydroxyureaLysineMethylationMolecular Sequence DataOxidoreductases, N-DemethylatingProtein Processing, Post-TranslationalProtein Structure, TertiaryDNA, Single-StrandedH2AX protein, humanHistone-Lysine N-MethyltransferaseHistonesHydroxyureaLysineOxidoreductases, N-DemethylatingRecombinant Fusion ProteinsSETMAR protein, human

Identifiers

PMID26437079
PMCPMC4593633

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.