ArticleInternational journal of plant genomics2015
Genome-Wide Comparative Analysis of Flowering-Related Genes in Arabidopsis, Wheat, and Barley.
Article in International journal of plant genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 73 citations in OpenAlex.
- Molecular genetic examination of Circadian Clock Associated 1 gene (CCA1) in hexaploid wheat.BMC plant biology · 2026Article
- Genome-wide identification of chitinase gene family in Hordeum vulgare: insights into stress response mechanisms and evolutionary dynamics.BMC plant biology · 2025Article
- Molecular genetic regulation of the vegetative-generative transition in wheat from an environmental perspective.Annals of botany · 2025Review
- Article
- Identification of candidate genes responsible for chasmogamy in wheat.BMC genomics · 2023Article
- Genome-Wide Association Analysis for Hybrid Breeding in Wheat.International journal of molecular sciences · 2022Article
- Functional characterization of genes with daily expression patterns in common wheat.Plant molecular biology · 2022Article
- Transcriptomic Analysis of Early Flowering Signals in 'Royal' Flax.Plants (Basel, Switzerland) · 2022Article
- Divergence of flowering-related genes to control flowering in five Euphorbiaceae genomes.Frontiers in plant science · 2022Article
- Transcriptome profiling of developing leaf and shoot apices to reveal the molecular mechanism and co-expression genes responsible for the wheat heading date.BMC genomics · 2021Article
- Genome-wide identification of lncRNAs during hickory (Carya cathayensis) flowering.Functional & integrative genomics · 2020Article
- Analysis of the quinoa genome reveals conservation and divergence of the flowering pathways.Functional & integrative genomics · 2020Article
- Genome-wide identification of thePeerJ · 2020Article
- Adaptive signals of flowering time pathways in wild barley from Israel over 28 generations.Heredity · 2020Article
- Genetic and Molecular Control of Floral Organ Identity in Cereals.International journal of molecular sciences · 2019Review
- Genome-Wide Identification of Flowering-Time Genes inInternational journal of molecular sciences · 2018Article
- Dynamical Modeling of the Core Gene Network Controlling Flowering Suggests Cumulative Activation From theFrontiers in genetics · 2018Article
- Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.).BMC genomics · 2017Article
- Inferring defense-related gene families in Arabidopsis and wheat.BMC genomics · 2017Article
- The ChickpeaPlant physiology · 2017Article
Corrections and comments
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Authors and funding
3 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Early flowering is an important trait influencing grain yield and quality in wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) in short-season cropping regions. However, due to large and complex genomes of these species, direct identification of flowering genes and their molecular characterization remain challenging. Here, we used a bioinformatic approach to predict flowering-related genes in wheat and barley from 190 known Arabidopsis (Arabidopsis thaliana (L.) Heynh.) flowering genes. We identified 900 and 275 putative orthologs in wheat and barley, respectively. The annotated flowering-related genes were clustered into 144 orthologous groups with one-to-one, one-to-many, many-to-one, and many-to-many orthology relationships. Our approach was further validated by domain and phylogenetic analyses of flowering-related proteins and comparative analysis of publicly available microarray data sets for in silico expression profiling of flowering-related genes in 13 different developmental stages of wheat and barley. These further analyses showed that orthologous gene pairs in three critical flowering gene families (PEBP, MADS, and BBX) exhibited similar expression patterns among 13 developmental stages in wheat and barley, suggesting similar functions among the orthologous genes with sequence and expression similarities. The predicted candidate flowering genes can be confirmed and incorporated into molecular breeding for early flowering wheat and barley in short-season cropping regions.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.