Evidence map›Paper›PMID 26435036›Full record

ArticleProtein science : a publication of the Protein Society2015

Caenorhabditis elegans NONO-1: Insights into DBHS protein structure, architecture, and function.

Gavin J Knott, Mihwa Lee, Daniel M Passon, Archa H Fox, Charles S Bond

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Engineering a protein homodimer from a heterodimer: A chimeric DBHS protein.Protein science : a publication of the Protein Society · 2026
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  12. NONO and tumorigenesis: More than splicing.Journal of cellular and molecular medicine · 2020
    Review
  13. A new crystal structure and small-angle X-ray scattering analysis of the homodimer of human SFPQ.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Gavin J KnottSchool of Chemistry and Biochemistry, The University of Western Australia, Crawley, Western Australia, 6009, Australia.
Mihwa LeeDepartment of Biochemistry and Genetics, La Trobe University, Melbourne, Victoria, Australia.
Daniel M PassonSchool of Chemistry and Biochemistry, The University of Western Australia, Crawley, Western Australia, 6009, Australia.
Archa H FoxHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands and Centre for Medical Research, The University of Western Australia, Crawley, Western Australia, 6009, Australia.
Charles S BondSchool of Chemistry and Biochemistry, The University of Western Australia, Crawley, Western Australia, 6009, Australia.
University of Western Australia · AUEuropean Molecular Biology Laboratory · DELa Trobe University · AUQueen Elizabeth II Medical Centre · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the Drosophila behavior/human splicing (DBHS) protein family have been characterized in the vertebrates Homo sapiens and Mus musculus, and the invertebrates Drosophila melanogaster and Chironomus tentans. Collectively, both vertebrate and invertebrate DBHS proteins function throughout gene regulation, largely but not always, within the nucleus. In this study, we report a structural and bioinformatic analysis of the DBHS protein family to guide future studies into DBHS protein function. To explore the structural plasticity of the family, we describe the 2.4 Å crystal structure of Caenorhabditis elegans non-POU domain-containing octamer-binding protein 1 (NONO-1). The structure is dimeric, with a domain arrangement consistent with mammalian DBHS proteins. Comparison with the DBHS structures available from H. sapiens reveals that there is inherent domain flexibility within the homologous DBHS region. Mapping amino acid similarity within the family to the NONO-1 dimer highlights the dimer interface, coiled-coil oligomerization motif, and putative RNA binding surfaces. Surprisingly, the interior surface of RNA recognition motif 2 (RRM2) that faces a large internal void is highly variable, but the external β2-β3 loops of RRM2 show remarkable preservation. Overall, the DBHS region is under strong purifying selection, whereas the sequences N- and C-terminal to the DBHS region are less constrained. The findings described in this study provide a molecular basis for further investigation into the mechanistic function of the DBHS protein family in biology.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCaenorhabditis elegansCaenorhabditis elegans ProteinsComputational BiologyConserved SequenceCrystallography, X-RayModels, MolecularPhylogenyProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryRNARNA-Binding ProteinsSelection, GeneticCaenorhabditis elegans ProteinsRNARNA-Binding Proteinsamino acid similarityDBHS protein familydimerizationNONO-1protein structureRNA bindingselection pressure

Identifiers

PMID26435036
PMCPMC4815227
OpenAlexW2174047746

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.