Evidence map›Paper›PMID 26434659›Full record

ArticleMicrobiologyOpen2015

Characterization of Mycobacterium smegmatis sigF mutant and its regulon: overexpression of SigF antagonist (MSMEG_1803) in M. smegmatis mimics sigF mutant phenotype, loss of pigmentation, and sensitivity to oxidative stress.

Anirudh K Singh, Debashis Dutta, Vandana Singh, Vishal Srivastava, Rajesh K Biswas, Bhupendra N Singh

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

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  8. STAS Domain Only Proteins in Bacterial Gene Regulation.Frontiers in cellular and infection microbiology · 2021
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  12. Induction of theFrontiers in microbiology · 2020
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  15. Tripartite Regulation of theJournal of bacteriology · 2019
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  16. Mutational loss of carotenoids in alkaliphilicMicrobiology (Reading, England) · 2019
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Anirudh K SinghDivision of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Debashis DuttaDivision of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Vandana SinghDivision of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Vishal SrivastavaDivision of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Rajesh K BiswasDivision of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Bhupendra N SinghDivision of Microbiology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Central Drug Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Mycobacterium smegmatis, sigF is widely expressed during different growth stages and plays role in adaptation to stationary phase and oxidative stress. Using a sigF deletion mutant of M. smegmatis mc(2) 155, we demonstrate that SigF is not essential for growth of bacterium. Deletion of sigF results in loss of carotenoid pigmentation which rendered increased susceptibility to H2 O2 induced oxidative stress in M. smegmatis. SigF modulates the cell surface architecture and lipid biosynthesis extending the repertoire of SigF function in this species. M. smegmatis SigF regulon included variety of genes expressed during exponential and stationary phases of growth and those responsible for oxidative stress, lipid biosynthesis, energy, and central intermediary metabolism. Furthermore, we report the identification of a SigF antagonist, an anti-sigma factor (RsbW), which upon overexpression in M. smegmatis wild type strain produced a phenotype similar to M. smegmatis mc(2) 155 ΔsigF strain. The SigF-anti-SigF interaction is duly validated using bacterial two-hybrid and pull down assays. In addition, anti-sigma factor antagonists, RsfA and RsfB were identified and their interactions with anti-sigma factor were experimentally validated. Identification of these proteins will help decode regulatory circuit of this alternate sigma factor.

Indexed as

MutationRegulonBacterial ProteinsCarotenoidsCarrier ProteinsGene Expression Regulation, BacterialMycobacterium smegmatisOxidative StressPhenotypeSigma FactorBacterial ProteinsCarotenoidsCarrier ProteinsRsbW protein, bacteriaSigma FactorAnti-SigFanti-SigF antagonistsM. smegmatisoxidative stressSigF regulon

Identifiers

PMID26434659
PMCPMC4694148
OpenAlexW2099910213

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.