Evidence map›Paper›PMID 26433934›Full record

ArticleHuman molecular genetics2015

A non-synonymous single-nucleotide polymorphism associated with multiple sclerosis risk affects the EVI5 interactome.

Alessandro Didonna, Noriko Isobe, Stacy J Caillier, Kathy H Li, Alma L Burlingame, Stephen L Hauser, Sergio E Baranzini, Nikolaos A Patsopoulos, Jorge R Oksenberg

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Alessandro DidonnaDepartment of Neurology, alessandro.didonna@ucsf.edu.
Noriko IsobeDepartment of Neurology.
Stacy J CaillierDepartment of Neurology.
Kathy H LiDepartment of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA 94158, USA.
Alma L BurlingameDepartment of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA 94158, USA.
Stephen L HauserDepartment of Neurology.
Sergio E BaranziniDepartment of Neurology.
Nikolaos A PatsopoulosBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA, Program in Translational NeuroPsychiatric Genomics, Department of Neurology, Institute for the Neurosciences and Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02142, USA.
Jorge R OksenbergDepartment of Neurology.
University of California, San Francisco · USBroad Institute · US

Funding

GENE LINKAGE STUDY OF MULTIPLE SCLEROSIS SIBLING PAIRSR01NS026799 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HAUSER, STEPHEN L, OKSENBERG, JORGE R. · 1989 to 2018
$6.8M
NINDS Research Education Programs for Residents and Fellows in Neurology, Neurosurgery, Neuropathology, Neuroradiology and Emergency Medicine (R25)R25NS070680 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOSEPHSON, SCOTT ANDREW · 2010 to 2023
$6.8M
The contribution of common and rare variants to autoimmunity in African AmericansR01NS076492 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI OKSENBERG, JORGE R. · 2011 to 2014
$1.3M
NINDS NIH HHS R01 NS026799NINDS NIH HHS R01NS026799NINDS NIH HHS R01 NS076492NINDS NIH HHS R01NS76492NINDS NIH HHS R25 NS070680
6 · The paper itself

Abstract

Despite recent progress in the characterization of genetic loci associated with multiple sclerosis (MS) risk, the ubiquitous linkage disequilibrium operating across the genome has stalled efforts to distinguish causative variants from proxy single-nucleotide polymorphisms (SNPs). Here, we have identified through fine mapping and meta-analysis EVI5 as the most plausible disease risk gene within the 1p22.1 locus. We further show that an exonic SNP associated with risk induces changes in superficial hydrophobicity patterns of the coiled-coil domain of EVI5, which, in turns, affects the EVI5 interactome. Immunoprecipitation of wild-type and mutated EVI5 followed by mass spectrometry generated a roster of disease-specific interactors functionally linked to lipid metabolism. Among the exclusive binding partners of the risk variant, we describe the novel interaction with sphingosine 1-phosphate lyase (SGPL1)-a key enzyme for the creation of the sphingosine-1 phosphate gradient, which is relevant to the pathogenic process and therapeutic management of MS.

Indexed as

Polymorphism, Single NucleotideCell Cycle ProteinsChromosome MappingChromosomes, Human, Pair 1GTPase-Activating ProteinsHeLa CellsHumansMultiple SclerosisNuclear ProteinsProteomeRisk FactorsCell Cycle ProteinsEVI5 protein, humanGTPase-Activating ProteinsNuclear ProteinsProteome

Identifiers

PMID26433934
PMCPMC5007634
OpenAlexW2176042294

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.