Evidence map›Paper›PMID 26433064›Full record

ArticleDevelopmental biology2015

RNA sequences required for the noncoding function of oskar RNA also mediate regulation of Oskar protein expression by Bicoid Stability Factor.

Young Hee Ryu, Paul M Macdonald

Abstract read
In one paragraph

Article in Developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
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  9. Review
  10. Article
  11. Article
  12. Germ Line Mechanics--And Unfinished Business.Current topics in developmental biology · 2016
    Review
  13. Germ Plasm Biogenesis--An Oskar-Centric Perspective.Current topics in developmental biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Young Hee RyuDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712, USA.
Paul M MacdonaldDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712, USA. Electronic address: pmac@utexas.edu.
The University of Texas at Austin · US

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Translational control by cis elements acting in transR01GM096730 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MACDONALD, PAUL M. · 2011 to 2014
$962k
NIGMS NIH HHS R01 GM084947NIGMS NIH HHS R01-GM084947NIGMS NIH HHS R01 GM096730NIH HHS P40 OD018537NIH HHS P40OD018537
6 · The paper itself

Abstract

The Drosophila oskar (osk) mRNA is unusual in having both coding and noncoding functions. As an mRNA, osk encodes a protein which is deployed specifically at the posterior of the oocyte. This spatially-restricted deployment relies on a program of mRNA localization and both repression and activation of translation, all dependent on regulatory elements located primarily in the 3' untranslated region (UTR) of the mRNA. The 3' UTR also mediates the noncoding function of osk, which is essential for progression through oogenesis. Mutations which most strongly disrupt the noncoding function are positioned in a short region (the C region) near the 3' end of the mRNA, in close proximity to elements required for activation of translation. We show that Bicoid Stability Factor (BSF) binds specifically to the C region of the mRNA. Both knockdown of bsf and mutation of BSF binding sites in osk mRNA have the same consequences: Osk expression is largely eliminated late in oogenesis, with both mRNA localization and translation disrupted. Although the C region of the osk 3' UTR is required for the noncoding function, BSF binding does not appear to be essential for that function.

Indexed as

Gene Expression Regulation3' Untranslated RegionsAnimalsBase SequenceBinding SitesDrosophila melanogasterDrosophila ProteinsMolecular Sequence DataMutationPolyadenylationProtein BindingRNA-Binding ProteinsRNA, MessengerRNA StabilityRNA, Untranslated3' Untranslated Regionsbicoid stability factor, Drosophilabrun protein, DrosophilaDrosophila Proteinsosk protein, DrosophilaRNA-Binding ProteinsRNA, MessengerRNA, UntranslatedBSFlncRNAmRNA localizationoskarTranslational activation

Identifiers

PMID26433064
PMCPMC4663177
OpenAlexW1882480760

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.