Evidence map›Paper›PMID 26432860›Full record

ArticleThe Plant cell2015

Proteomic Analysis of Microtubule Interacting Proteins over the Course of Xylem Tracheary Element Formation in Arabidopsis.

Paul Derbyshire, Delphine Ménard, Porntip Green, Gerhard Saalbach, Henrik Buschmann, Clive W Lloyd, Edouard Pesquet

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Paul DerbyshireJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom.ORCID http://orcid.org/0000-0002-5095-9397
Delphine MénardUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, 901 87 Umeå, Sweden.ORCID http://orcid.org/0000-0002-7320-7921
Porntip GreenJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom.ORCID http://orcid.org/0000-0002-1968-0574
Gerhard SaalbachJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom.ORCID http://orcid.org/0000-0002-9849-4875
Henrik BuschmannJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Clive W LloydJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Edouard PesquetJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 901 87 Umeå, Sweden edouard.pesquet@umu.se.ORCID http://orcid.org/0000-0002-6959-3284
John Innes Centre · GBUmeå Plant Science Centre · SE

Funding

Biotechnology and Biological Sciences Research Council BB/G008019/1
6 · The paper itself

Abstract

Plant vascular cells, or tracheary elements (TEs), rely on circumferential secondary cell wall thickenings to maintain sap flow. The patterns in which TE thickenings are organized vary according to the underlying microtubule bundles that guide wall deposition. To identify microtubule interacting proteins present at defined stages of TE differentiation, we exploited the synchronous differentiation of TEs in Arabidopsis thaliana suspension cultures. Quantitative proteomic analysis of microtubule pull-downs, using ratiometric (14)N/(15)N labeling, revealed 605 proteins exhibiting differential accumulation during TE differentiation. Microtubule interacting proteins associated with membrane trafficking, protein synthesis, DNA/RNA binding, and signal transduction peaked during secondary cell wall formation, while proteins associated with stress peaked when approaching TE cell death. In particular, CELLULOSE SYNTHASE-INTERACTING PROTEIN1, already associated with primary wall synthesis, was enriched during secondary cell wall formation. RNAi knockdown of genes encoding several of the identified proteins showed that secondary wall formation depends on the coordinated presence of microtubule interacting proteins with nonoverlapping functions: cell wall thickness, cell wall homogeneity, and the pattern and cortical location of the wall are dependent on different proteins. Altogether, proteins linking microtubules to a range of metabolic compartments vary specifically during TE differentiation and regulate different aspects of wall patterning.

Indexed as

ProteomicsSignal TransductionArabidopsisArabidopsis ProteinsCell DifferentiationCell WallGene Expression Regulation, PlantGene Knockdown TechniquesMicrotubule ProteinsMicrotubulesPlants, Genetically ModifiedRNA InterferenceXylemArabidopsis ProteinsMicrotubule Proteins

Identifiers

PMID26432860
PMCPMC4682315
OpenAlexW2173594310

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.