Evidence map›Paper›PMID 26432834›Full record

ArticleNucleic acids research2015

Dynamical features of the Plasmodium falciparum ribosome during translation.

Ming Sun, Wen Li, Karin Blomqvist, Sanchaita Das, Yaser Hashem, Jeffrey D Dvorin, Joachim Frank

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Structural basis for emetine inhibition of ribosome translocation inbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. eLife · 2020
    Article
  12. Genetic ablation of the mitoribosome in the malaria parasiteThe Journal of biological chemistry · 2020
    Article
  13. Review
  14. 3dRNA v2.0: An Updated Web Server for RNA 3D Structure Prediction.International journal of molecular sciences · 2019
    Article
  15. RACK1 on and off the ribosome.RNA (New York, N.Y.) · 2019
    Article
  16. Joachim Frank's Binding with the Ribosome.Structure (London, England : 1993) · 2019
    Review
  17. New Insights into Ribosome Structure and Function.Cold Spring Harbor perspectives in biology · 2019
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Ming SunDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Wen LiDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Karin BlomqvistDivision of Infectious Diseases, Boston Children's Hospital, Boston, MA 02115, USA Department of Pediatrics, Harvard Medical School, Boston, MA 02115, USA Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 171 77 Stockholm, Sweden.
Sanchaita DasProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Yaser HashemCNRS, Architecture et Réactivité de l'ARN, Université de Strasbourg, Strasbourg 67084, France.
Jeffrey D DvorinDivision of Infectious Diseases, Boston Children's Hospital, Boston, MA 02115, USA Department of Pediatrics, Harvard Medical School, Boston, MA 02115, USA jeffrey.dvorin@childrens.harvard.edu.
Joachim FrankDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA Howard Hughes Medical Institute, Columbia University, New York, NY 10032, USA jf2192@cumc.columbia.edu.ORCID http://orcid.org/0000-0001-5449-6943
Boston Children's Hospital · USColumbia University · USCentre National de la Recherche Scientifique · FRHoward Hughes Medical Institute · USUniversity of Massachusetts Chan Medical School · US

Funding

STRUCTURE ANALYSIS OF MACROMOLECULAR ASSEMBLIESR01GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1985 to 2019
$6.1M
Essential gene discovery in the malaria parasite Plasmodium falciparumDP2AI112219 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI DVORIN, JEFFREY D · 2013 to 2013
$2.6M
Molecular characterization and substrate identification of malaria kinase PfCDPK5R01AI102907 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI DVORIN, JEFFREY D · 2014 to 2017
$1.8M
NIAID NIH HHS DP2 AI112219NIAID NIH HHS R01 AI102907NIGMS NIH HHS R01 GM029169NIGMS NIH HHS R01 GM29169
6 · The paper itself

Abstract

Plasmodium falciparum, the mosquito-transmitted Apicomplexan parasite, causes the most severe form of human malaria. In the asexual blood-stage, the parasite resides within erythrocytes where it proliferates, multiplies and finally spreads to new erythrocytes. Development of drugs targeting the ribosome, the site of protein synthesis, requires specific knowledge of its structure and work cycle, and, critically, the ways they differ from those in the human host. Here, we present five cryo-electron microscopy (cryo-EM) reconstructions of ribosomes purified from P. falciparum blood-stage schizonts at sub-nanometer resolution. Atomic models were built from these density maps by flexible fitting. Significantly, our study has taken advantage of new capabilities of cryo-EM, in visualizing several structures co-existing in the sample at once, at a resolution sufficient for building atomic models. We have discovered structural and dynamic features that differentiate the ribosomes of P. falciparum from those of mammalian system. Prompted by the absence of RACK1 on the ribosome in our and an earlier study we confirmed that RACK1 does not specifically co-purify with the 80S fraction in schizonts. More extensive studies, using cryo-EM methodology, of translation in the parasite will provide structural knowledge that may lead to development of novel anti-malarials.

Indexed as

Protein BiosynthesisCryoelectron MicroscopyModels, MolecularPlasmodium falciparumReceptors, Cell SurfaceReceptors for Activated C KinaseRibosomesRibosome Subunits, Small, EukaryoticRNA, RibosomalReceptors, Cell SurfaceReceptors for Activated C KinaseRNA, Ribosomal

Identifiers

PMID26432834
PMCPMC4666399
OpenAlexW1527916516

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.