Evidence map›Paper›PMID 26432828›Full record

ArticleNucleic acids research2016

MaizeGDB update: new tools, data and interface for the maize model organism database.

Carson M Andorf, Ethalinda K Cannon, John L Portwood, Jack M Gardiner, Lisa C Harper, Mary L Schaeffer, Bremen L Braun, Darwin A Campbell, Abhinav G Vinnakota, Venktanaga V Sribalusu and 9 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

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  16. Mining genes regulating root system architecture in maize based on data integration analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  17. Editorial: Model organisms in plant science: Maize.Frontiers in plant science · 2023
    Article
  18. Review
  19. Article
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Carson M AndorfUSDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA Department of Computer Science, Iowa State University, Ames, IA 50011, USA carson.andorf@ars.usda.gov.
Ethalinda K CannonDepartment of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA.
John L PortwoodUSDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
Jack M GardinerDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.
Lisa C HarperUSDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
Mary L SchaefferUSDA-ARS Plant Genetics Research Unit, University of Missouri, Columbia, MO 65211, USA Division of Plant Sciences, Department of Agronomy, University of Missouri, Columbia, MO 65211, USA.
Bremen L BraunUSDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
Darwin A CampbellUSDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.
Abhinav G VinnakotaDepartment of Computer Science, Iowa State University, Ames, IA 50011, USA.
Venktanaga V SribalusuDepartment of Computer Science, Iowa State University, Ames, IA 50011, USA.
Miranda HuertaDepartment of Agronomy, Iowa State University, Ames, IA 50011, USA.
Kyoung Tak ChoDepartment of Computer Science, Iowa State University, Ames, IA 50011, USA.
Kokulapalan WimalanathanDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA Bioinformatics and Computational Biology, Iowa State University, Ames, IA 50011, USA.
Jacqueline D RichterDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.
Emily D MauchInterdepartmental Genetics and Genomics, Iowa State University, Ames, IA 50011, USA.
Bhavani S RaoDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.
Scott M BirkettDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.
Taner Z SenUSDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA.
Carolyn J Lawrence-DillUSDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, the original maize genetics database MaizeDB was created. In 2003, the combined contents of MaizeDB and the sequence data from ZmDB were made accessible as a single resource named MaizeGDB. Over the next decade, MaizeGDB became more sequence driven while still maintaining traditional maize genetics datasets. This enabled the project to meet the continued growing and evolving needs of the maize research community, yet the interface and underlying infrastructure remained unchanged. In 2015, the MaizeGDB team completed a multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface. In addition to coordinating a data resource, the MaizeGDB team coordinates activities and provides technical support to the maize research community. MaizeGDB is accessible online at http://www.maizegdb.org.

Indexed as

Databases, GeneticGene ExpressionGenes, PlantGenetic VariationGenome, PlantMetabolic Networks and PathwaysModels, GeneticSoftwareUser-Computer InterfaceZea mays

Identifiers

PMID26432828
PMCPMC4702771

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.