Evidence map›Paper›PMID 26431971›Full record

ArticleApplied and environmental microbiology2015

Landscape position influences microbial composition and function via redistribution of soil water across a watershed.

Zhe Du, Diego A Riveros-Iregui, Ryan T Jones, Timothy R McDermott, John E Dore, Brian L McGlynn, Ryan E Emanuel, Xu Li

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Aerobic bacterial methane synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhe DuDepartment of Civil Engineering, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Diego A Riveros-IreguiDepartment of Geography, University of North Carolina-Chapel Hill, Chapel Hill, North Carolina, USA.
Ryan T JonesDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, USA Institute on Ecosystems, Montana State University, Bozeman, Montana, USA.
Timothy R McDermottInstitute on Ecosystems, Montana State University, Bozeman, Montana, USA Department of Land Resources & Environmental Sciences, Montana State University, Bozeman, Montana, USA.
John E DoreInstitute on Ecosystems, Montana State University, Bozeman, Montana, USA Department of Land Resources & Environmental Sciences, Montana State University, Bozeman, Montana, USA.
Brian L McGlynnNicholas School of the Environment, Duke University, Durham, North Carolina, USA.
Ryan E EmanuelDepartment of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina, USA.
Xu LiDepartment of Civil Engineering, University of Nebraska-Lincoln, Lincoln, Nebraska, USA xuli@unl.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Subalpine forest ecosystems influence global carbon cycling. However, little is known about the compositions of their soil microbial communities and how these may vary with soil environmental conditions. The goal of this study was to characterize the soil microbial communities in a subalpine forest watershed in central Montana (Stringer Creek Watershed within the Tenderfoot Creek Experimental Forest) and to investigate their relationships with environmental conditions and soil carbonaceous gases. As assessed by tagged Illumina sequencing of the 16S rRNA gene, community composition and structure differed significantly among three landscape positions: high upland zones (HUZ), low upland zones (LUZ), and riparian zones (RZ). Soil depth effects on phylogenetic diversity and β-diversity varied across landscape positions, being more evident in RZ than in HUZ. Mantel tests revealed significant correlations between microbial community assembly patterns and the soil environmental factors tested (water content, temperature, oxygen, and pH) and soil carbonaceous gases (carbon dioxide concentration and efflux and methane concentration). With one exception, methanogens were detected only in RZ soils. In contrast, methanotrophs were detected in all three landscape positions. Type I methanotrophs dominated RZ soils, while type II methanotrophs dominated LUZ and HUZ soils. The relative abundances of methanotroph populations correlated positively with soil water content (R = 0.72, P < 0.001) and negatively with soil oxygen (R = -0.53, P = 0.008). Our results suggest the coherence of soil microbial communities within and differences in communities between landscape positions in a subalpine forested watershed that reflect historical and contemporary environmental conditions.

Indexed as

Soil MicrobiologyWater MicrobiologyArchaeaBacteriaBase SequenceCarbonCarbon DioxideDNA, ArchaealDNA, BacterialEcosystemForestsMethaneMicrobial ConsortiaMolecular Sequence DataMontanaOxygenCarbonCarbon DioxideDNA, ArchaealDNA, BacterialMethaneOxygenRNA, Ribosomal, 16S

Identifiers

PMID26431971
PMCPMC4644653

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.