Evidence map›Paper›PMID 26431028›Full record

ArticleMolecular cell2015

High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila.

Fidel Ramírez, Thomas Lingg, Sarah Toscano, Kin Chung Lam, Plamen Georgiev, Ho-Ryun Chung, Bryan R Lajoie, Elzo de Wit, Ye Zhan, Wouter de Laat and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Review
  3. N-terminus ofeLife · 2024
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  8. Set2 and H3K36 regulate thebioRxiv : the preprint server for biology · 2024
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  11. Recent Advances and Future Potential of Long Non-Coding RNAs in Insects.International journal of molecular sciences · 2023
    Review
  12. Dosage Compensation inInternational journal of molecular sciences · 2022
    Review
  13. Article
  14. Article
  15. Visualizing and Annotating Hi-C Data.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Fidel RamírezMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Thomas LinggMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany; Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Sarah ToscanoMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Kin Chung LamMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany; Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Plamen GeorgievMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Ho-Ryun ChungMax Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
Bryan R LajoieProgram in Systems Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605-0103, USA.
Elzo de WitHubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Ye ZhanProgram in Systems Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605-0103, USA.
Wouter de LaatHubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Job DekkerProgram in Systems Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605-0103, USA; Howard Hughes Medical Institute.
Thomas MankeMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Asifa AkhtarMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany. Electronic address: akhtar@ie-freiburg.mpg.de.
Max Planck Institute of Immunobiology and Epigenetics · DERoyal Netherlands Academy of Arts and Sciences · NLUniversity of Freiburg · DEUniversity of Massachusetts Chan Medical School · USHoward Hughes Medical Institute · USMax Planck Institute for Molecular Genetics · DE

Funding

Structural Annotation of the Human GenomeR01HG003143 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Job Dekker · 2003 to 2026
$15.4M
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG003143
6 · The paper itself

Abstract

Dosage compensation mechanisms provide a paradigm to study the contribution of chromosomal conformation toward targeting and spreading of epigenetic regulators over a specific chromosome. By using Hi-C and 4C analyses, we show that high-affinity sites (HAS), landing platforms of the male-specific lethal (MSL) complex, are enriched around topologically associating domain (TAD) boundaries on the X chromosome and harbor more long-range contacts in a sex-independent manner. Ectopically expressed roX1 and roX2 RNAs target HAS on the X chromosome in trans and, via spatial proximity, induce spreading of the MSL complex in cis, leading to increased expression of neighboring autosomal genes. We show that the MSL complex regulates nucleosome positioning at HAS, therefore acting locally rather than influencing the overall chromosomal architecture. We propose that the sex-independent, three-dimensional conformation of the X chromosome poises it for exploitation by the MSL complex, thereby facilitating spreading in males.

Indexed as

AnimalsBinding SitesCell LineChromatin Assembly and DisassemblyCytogenetic AnalysisDNA-Binding ProteinsDosage Compensation, GeneticDrosophila melanogasterDrosophila ProteinsFemaleMaleRNA-Binding ProteinsTranscription FactorsX ChromosomeDNA-Binding ProteinsDrosophila ProteinsPabp2 protein, DrosophilaRNA-Binding ProteinsroX1 protein, DrosophilaTranscription Factors

Identifiers

PMID26431028
PMCPMC4806858
OpenAlexW2163789882

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.