ArticlePloS one2015
Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch].
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
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Who cites it
55 citing papers in PubMed.
- Genetic Dissection of Adaptation Traits in Apricot Through GWAS and QTL Analyses.International journal of molecular sciences · 2026Article
- Uncovering novel loci and developing functional Kompetitive Allele Specific PCR markers for chilling requirement in peach via genome-wide association study.Horticulture research · 2026Article
- A multi-layer regulatory landscape of chilling requirement revealed by stage-resolved transcriptomics and hormone profiling in peach floral buds.Frontiers in plant science · 2026Article
- QTL mapping and candidate gene identification of the full flowering date trait in olive trees (Olea Europaea L.).BMC plant biology · 2025Article
- Genetic architecture of key traits forHorticulture research · 2025Article
- The PeachSNP170K array facilitates insights into a large-scale population relatedness and genetic impacts on citrate content and flowering time.Communications biology · 2025Article
- Using Quantitative Trait Locus Mapping and Genomic Resources to Improve Breeding Precision in Peaches: Current Insights and Future Prospects.Plants (Basel, Switzerland) · 2025Review
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- Article
- Deciphering the genetic mechanisms of chilling requirement for bud endodormancy release in deciduous fruit trees.Molecular breeding : new strategies in plant improvement · 2024Article
- A gibberellin-assisted study of the transcriptional and hormonal changes occurring at floral transition in peach buds (Prunus persica L. Batsch).BMC plant biology · 2024Article
- Development of an SNP marker set for marker-assisted backcrossing using genotyping-by-sequencing in tetraploid perilla.Molecular genetics and genomics : MGG · 2023Article
- Marker-Assisted Selection in Breeding for Fruit Trait Improvement: A Review.International journal of molecular sciences · 2023Review
- Ppe.CR.1 DNA test for predicting chilling requirement in peach.Scientific reports · 2023Article
- Exploring genetic diversity and population structure of a large grapevine (Frontiers in plant science · 2023Article
- Identification of Key Genes Related to Dormancy Control inPlants (Basel, Switzerland) · 2022Article
- Peach [Frontiers in plant science · 2022Article
- QTLs Identification for Iron Chlorosis in a Segregating Peach-Almond Progeny Through Double-Digest Sequence-Based Genotyping (SBG).Frontiers in plant science · 2022Article
- Mapping Floral Genetic Architecture inFrontiers in plant science · 2022Article
- The Identification of Small RNAs Differentially Expressed in Apple Buds Reveals a Potential Role of the Mir159-MYB Regulatory Module during Dormancy.Plants (Basel, Switzerland) · 2021Article
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Low-cost, high throughput genotyping methods are crucial to marker discovery and marker-assisted breeding efforts, but have not been available for many 'specialty crops' such as fruit and nut trees. Here we apply the Genotyping-By-Sequencing (GBS) method developed for cereals to the discovery of single nucleotide polymorphisms (SNPs) in a peach F2 mapping population. Peach is a genetic and genomic model within the Rosaceae and will provide a template for the use of this method with other members of this family. Our F2 mapping population of 57 genotypes segregates for bloom time (BD) and chilling requirement (CR) and we have extensively phenotyped this population. The population derives from a selfed F1 progeny of a cross between 'Hakuho' (high CR) and 'UFGold' (low CR). We were able to successfully employ GBS and the TASSEL GBS pipeline without modification of the original methodology using the ApeKI restriction enzyme and multiplexing at an equivalent of 96 samples per Illumina HiSeq 2000 lane. We obtained hundreds of SNP markers which were then used to construct a genetic linkage map and identify quantitative trait loci (QTL) for BD and CR.
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