Evidence map›Paper›PMID 26428924›Full record

ArticleJournal of microbiology (Seoul, Korea)2015

The hrp pathogenicity island of Pseudomonas syringae pv. tomato DC3000 is induced by plant phenolic acids.

Jun Seung Lee, Hye Ryun Ryu, Ji Young Cha, Hyung Suk Baik

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Regulation of theMicroorganisms · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jun Seung LeeDepartment of Integrated Biological Science, College of Natural Sciences, Pusan National University, Busan, 46241, Republic of Korea.
Hye Ryun RyuR & D, CJ Cheil Jedang Corporation, Seoul, 04560, Republic of Korea.
Ji Young ChaDepartment of Biotechnology and Bioengineering, College of Engineering, Dong-Eui University, Busan, 47340, Republic of Korea.
Hyung Suk BaikDepartment of Integrated Biological Science, College of Natural Sciences, Pusan National University, Busan, 46241, Republic of Korea. hsubaik@pusan.ac.kr.
Pusan National University · KRCJ CheilJedang (South Korea) · KRDong-Eui University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants produce a wide array of antimicrobial compounds, such as phenolic compounds, to combat microbial pathogens. The hrp PAI is one of the major virulence factors in the plant pathogen, Pseudomonas syringae. A major role of hrp PAI is to disable the plant defense system during bacterial invasion. We examined the influence of phenolic compounds on hrp PAI gene expression at low and high concentrations. There was approximately 2.5 times more hrpA and hrpZ mRNA in PtoDC3000 that was grown in minimal media (MM) supplemented with 10 -M of ortho-coumaric acid than in PtoDC3000 grown in MM alone. On the other hand, a significantly lower amount of hrpA mRNA was observed in bacteria grown in MM supplemented with a high concentration of phenolic compounds. To determine the regulation pathway for hrp PAI gene expression, we performed qRTPCR using gacS, gacA, and hrpS deletion mutants.

Indexed as

Bacterial Outer Membrane ProteinsCoumaric AcidsGene Expression Regulation, BacterialGenomic IslandsHydroxybenzoatesPlant DiseasesPlasmidsPseudomonas syringaeRNA, MessengerSequence DeletionSolanum lycopersicumVirulenceBacterial Outer Membrane ProteinsCoumaric AcidsHrpZ protein, Pseudomonas syringaeHydroxybenzoatesphenolic acidRNA, Messengerhrp PAIplant-pathogen interactionplant phenolic compoundsPseudomonas syringaeqRT-PCR

Identifiers

PMID26428924
OpenAlexW2180172792

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.