ArticleJournal of microbiology (Seoul, Korea)2015
Illumina-based analysis of bacterial diversity related to halophytes Salicornia europaea and Sueada aralocaspica.
Article in Journal of microbiology (Seoul, Korea), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 46 citations in OpenAlex.
- Soil bacterial diversity and community structure ofFrontiers in microbiology · 2024Article
- Insight into endophytic microbial diversity in two halophytes and plant beneficial attributes ofFrontiers in microbiology · 2024Article
- Bacterial Community Structure and Potential Microbial Coexistence Mechanism Associated with Three Halophytes Adapting to the Extremely Hypersaline Environment.Microorganisms · 2022Article
- Deciphering the role of endophytic microbiome in postharvest diseases management of fruits: Opportunity areas in commercial up-scale production.Frontiers in plant science · 2022Review
- Article
- Profiles ofJournal of microbiology and biotechnology · 2021Article
- Rhizosphere bacteria community and functions under typical natural halophyte communities in North China salinized areas.PloS one · 2021Article
- Article
- Comparative Analysis of Bacterial Diversity and Community Structure in the Rhizosphere and Root Endosphere of Two Halophytes, Salicornia europaea and Glaux maritima, Collected from Two Brackish Lakes in Japan.Microbes and environments · 2020Article
- Transcriptome profiling and environmental linkage to salinity across Salicornia europaea vegetation.BMC plant biology · 2019Article
- Article
- Bacterial and Fungal Endophytic Microbiomes ofApplied and environmental microbiology · 2019Article
- A Microbiome Study Reveals Seasonal Variation in Endophytic Bacteria Among different Mulberry Cultivars.Computational and structural biotechnology journal · 2019Article
- Diversity of Bacterial Microbiota of Coastal Halophyte Limonium sinense and Amelioration of Salinity Stress Damage by Symbiotic Plant Growth-Promoting Actinobacterium Glutamicibacter halophytocola KLBMP 5180.Applied and environmental microbiology · 2018Article
- Bacterial microbiome of root-associated endophytes of Salicornia europaea in correspondence to different levels of salinity.Environmental science and pollution research international · 2018Article
- Bacterial Diversity Associated With the Rhizosphere and Endosphere of Two Halophytes:Frontiers in microbiology · 2018Article
- The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing.Frontiers in microbiology · 2017Review
- Illumina-Based Analysis of Endophytic and Rhizosphere Bacterial Diversity of the Coastal HalophyteFrontiers in microbiology · 2017Article
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We used Illumina-based 16S rRNA V3 amplicon pyrosequencing to investigate the community structure of soil bacteria from the rhizosphere surrounding Salicornia europaea, and endophytic bacteria living in Salicornia europaea plants and Sueada aralocaspica seeds growing at the Fukang Desert Ecosystem Observation and Experimental Station (FDEOES) in Xinjiang Province, China, using an Illumina genome analyzer. A total of 89.23 M effective sequences of the 16S rRNA gene V3 region were obtained from the two halophyte species. These sequences revealed a number of operational taxonomic units (OTUs) in the halophytes. There were between 22-2,206 OTUs in the halophyte plant sample, at the 3% cutoff level, and a sequencing depth of 30,000 sequences. We identified 25 different phyla, 39 classes and 141 genera from the resulting 134,435 sequences. The most dominant phylum in all the samples was Proteobacteria (41.61%-99.26%; average, 43.30%). The other large phyla were Firmicutes (0%- 7.19%; average, 1.15%), Bacteroidetes (0%-1.64%; average, 0.44%) and Actinobacteria (0%-0.46%; average, 0.24%). This result suggested that the diversity of bacteria is abundant in the rhizosphere soil, while the diversity of bacteria was poor within Salicornia europaea plant samples. To the extent of our knowledge, this study is the first to characterize and compare the endophytic bacteria found within different halophytic plant species roots using PCR-based Illumina pyrosequencing method.
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