ArticleBioinformatics (Oxford, England)2016
ALP & FALP: C++ libraries for pairwise local alignment E-values.
Article in Bioinformatics (Oxford, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
4 citing papers in PubMed, 8 citations in OpenAlex.
- Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank.Genome biology · 2020Article
- Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold.Nature methods · 2019Article
- Clustering huge protein sequence sets in linear time.Nature communications · 2018Article
- Protein sequence-similarity search acceleration using a heuristic algorithm with a sensitive matrix.Journal of structural and functional genomics · 2016Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 2 countries.
Funding
Abstract
motivationPairwise local alignment is an indispensable tool for molecular biologists. In real time (i.e. in about 1 s), ALP (Ascending Ladder Program) calculates the E-values for protein-protein or DNA-DNA local alignments of random sequences, for arbitrary substitution score matrix, gap costs and letter abundances; and FALP (Frameshift Ascending Ladder Program) performs a similar task, although more slowly, for frameshifting DNA-protein alignments. AVAILABILITY AND IMPLEMENTATION: To permit other C++ programmers to implement the computational efficiencies in ALP and FALP directly within their own programs, C++ source codes are available in the public domain at http://go.usa.gov/3GTSW under 'ALP' and 'FALP', along with the standalone programs ALP and FALP. CONTACT: spouge@nih.gov SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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