Evidence map›Paper›PMID 26427552›Full record

ArticleBiochimica et biophysica acta2016

Electron transfer activity of a de novo designed copper center in a three-helix bundle fold.

Jefferson S Plegaria, Christian Herrero, Annamaria Quaranta, Vincent L Pecoraro

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Catalysis and Electron Transfer inChemical reviews · 2022
    Review
  3. De novo metalloprotein design.Nature reviews. Chemistry · 2022
    Article
  4. Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.Angewandte Chemie (International ed. in English) · 2020
    Review
  5. Review
  6. Article
  7. Computational approaches forBioscience reports · 2017
    Review
  8. Article
  9. Preface.Methods in enzymology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jefferson S PlegariaDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, United States.
Christian HerreroInstitut de Chimie Moléculaire et des Matériaux d'Orsay, Université Paris Sud, CNRS, 91405 Orsay Cedex, France.
Annamaria QuarantaiBiTec-S, CEA Saclay, Bât 532, 91191 Gif-sur-Yvette Cedex, France. Electronic address: Annamaria.QUARANTA@cea.fr.
Vincent L PecoraroDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109, United States. Electronic address: vlpec@umich.edu.

Funding

Toxic Metal Complexation By de Novo Designed PeptidesR01ES012236 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PECORARO, VINCENT L · 2003 to 2018
$4.4M
NIEHS NIH HHS ES012236NIEHS NIH HHS R01 ES012236
6 · The paper itself

Abstract

In this work, we characterized the intermolecular electron transfer (ET) properties of a de novo designed metallopeptide using laser-flash photolysis. α3D-CH3 is three helix bundle peptide that was designed to contain a copper ET site that is found in the β-barrel fold of native cupredoxins. The ET activity of Cuα3D-CH3 was determined using five different photosensitizers. By exhibiting a complete depletion of the photo-oxidant and the successive formation of a Cu(II) species at 400 nm, the transient and generated spectra demonstrated an ET transfer reaction between the photo-oxidant and Cu(I)α3D-CH3. This observation illustrated our success in integrating an ET center within a de novo designed scaffold. From the kinetic traces at 400 nm, first-order and bimolecular rate constants of 10(5) s(-1) and 10(8) M(-1) s(-1) were derived. Moreover, a Marcus equation analysis on the rate versus driving force study produced a reorganization energy of 1.1 eV, demonstrating that the helical fold of α3D requires further structural optimization to efficiently perform ET. This article is part of a Special Issue entitled Biodesign for Bioenergetics--the design and engineering of electronic transfer cofactors, proteins and protein networks, edited by Ronald L. Koder and J.L. Ross Anderson.

Indexed as

Catalytic DomainAmino Acid MotifsAmino Acid SequenceAzurinCopperEnergy MetabolismHumansModels, MolecularPlastocyaninProtein EngineeringProtein FoldingProtein Structure, SecondaryRecombinant Fusion ProteinsAzurinCoppercupredoxinPlastocyaninRecombinant Fusion ProteinsrusticyaninCupredoxinDe novo designLaser-flash photolysisPhotoinduced electron transferThree-helix bundle

Identifiers

PMID26427552
PMCPMC5233711

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.