Evidence map›Paper›PMID 26426478›Full record

ArticleeLife2015

Hypocretin neuron-specific transcriptome profiling identifies the sleep modulator Kcnh4a.

Laura Yelin-Bekerman, Idan Elbaz, Alex Diber, Dvir Dahary, Liron Gibbs-Bar, Shahar Alon, Tali Lerer-Goldshtein, Lior Appelbaum

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Voltage Gated Ion Channels and Sleep.The Journal of membrane biology · 2024
    Review
  6. Single-Cell Profiling Uncovers Evolutionary Divergence of Hypocretin/Orexin Neuronal Subpopulations.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  7. Article
  8. Review
  9. Genetic and Neurological Deficiencies in the Visual System ofInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Recent advances in sleep genetics.Current opinion in neurobiology · 2021
    Review
  15. Biology open · 2021
    Article
  16. Heterogeneity of Hypocretin/Orexin Neurons.Frontiers of neurology and neuroscience · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Laura Yelin-BekermanThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
Idan ElbazThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
Alex DiberThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
Dvir DaharyToldot Genetics Ltd., Hod Hasharon, Israel.
Liron Gibbs-BarThe Weizmann Institute of Science, Rehovot, Israel.
Shahar AlonMedia Lab, Massachusetts Institute of Technology, Cambridge, United states.
Tali Lerer-GoldshteinThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
Lior AppelbaumThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
Bar-Ilan University · ILMassachusetts Institute of Technology · USWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sleep has been conserved throughout evolution; however, the molecular and neuronal mechanisms of sleep are largely unknown. The hypothalamic hypocretin/orexin (Hcrt) neurons regulate sleep\wake states, feeding, stress, and reward. To elucidate the mechanism that enables these various functions and to identify sleep regulators, we combined fluorescence cell sorting and RNA-seq in hcrt:EGFP zebrafish. Dozens of Hcrt-neuron-specific transcripts were identified and comprehensive high-resolution imaging revealed gene-specific localization in all or subsets of Hcrt neurons. Clusters of Hcrt-neuron-specific genes are predicted to be regulated by shared transcription factors. These findings show that Hcrt neurons are heterogeneous and that integrative molecular mechanisms orchestrate their diverse functions. The voltage-gated potassium channel Kcnh4a, which is expressed in all Hcrt neurons, was silenced by the CRISPR-mediated gene inactivation system. The mutant kcnh4a (kcnh4a(-/-)) larvae showed reduced sleep time and consolidation, specifically during the night, suggesting that Kcnh4a regulates sleep.

Indexed as

Gene Expression ProfilingSleepAnimalsGene Knockdown TechniquesMolecular Sequence DataNerve Tissue ProteinsNeuronsOrexinsPotassium Channels, Voltage-GatedSequence Analysis, DNAZebrafishNerve Tissue ProteinsOrexinsPotassium Channels, Voltage-Gatedhypocretinkcnh4aneuroscienceorexinsleeptranscriptomezebrafish

Identifiers

PMID26426478
PMCPMC4718730
OpenAlexW2184717764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.