Evidence map›Paper›PMID 26425798›Full record

ArticleProteomics2016

A proteomics approach to identifying key protein targets involved in VEGF inhibitor mediated attenuation of bleomycin-induced pulmonary fibrosis.

Yogesh M Kulkarni, Sucharita Dutta, Anand Krishnan V Iyer, Rajkumar Venkatadri, Vivek Kaushik, Vani Ramesh, Clayton A Wright, Oliver John Semmes, Juan S Yakisich, Neelam Azad

Abstract read
In one paragraph

Article in Proteomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  13. [A Review of Drug Therapy of Lung Cancer with Interstitial Lung Disease].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yogesh M KulkarniDepartment of Pharmaceutical Sciences, School of Pharmacy, Hampton University, Hampton, VA, USA.
Sucharita DuttaDepartment of Microbiology and Molecular Cell Biology, Eastern Virginia Medical School, Norfolk, VA, USA.
Anand Krishnan V IyerDepartment of Pharmaceutical Sciences, School of Pharmacy, Hampton University, Hampton, VA, USA.
Rajkumar VenkatadriDepartment of Pharmaceutical Sciences, School of Pharmacy, Hampton University, Hampton, VA, USA.
Vivek KaushikDepartment of Pharmaceutical Sciences, School of Pharmacy, Hampton University, Hampton, VA, USA.
Vani RameshDepartment of Obstetrics and Gynecology, The Jones Institute for Reproductive Medicine, Eastern Virginia Medical School, Norfolk, VA, USA.
Clayton A WrightDepartment of Pharmaceutical Sciences, School of Pharmacy, Hampton University, Hampton, VA, USA.
Oliver John SemmesDepartment of Microbiology and Molecular Cell Biology, Eastern Virginia Medical School, Norfolk, VA, USA.
Juan S YakisichDepartment of Pharmaceutical Sciences, School of Pharmacy, Hampton University, Hampton, VA, USA.
Neelam AzadDepartment of Pharmaceutical Sciences, School of Pharmacy, Hampton University, Hampton, VA, USA.
Hampton University · USEastern Virginia Medical School · US

Funding

Anti-Tumorigenic Potential of Novel Digitoxin AnaloguesSC1CA173069 · NCI · HAMPTON UNIVERSITY · PI IYER, ANAND K. · 2012 to 2016
$1.3M
Impact of Oxidative Stress-Regulated Angiogenesis in Pulmonary FibrosisSC1HL112630 · NHLBI · HAMPTON UNIVERSITY · PI AZAD, NEELAM · 2011 to 2015
$1.3M
NCI NIH HHS CA173069NCI NIH HHS SC1 CA173069NHLBI NIH HHS HL112630NHLBI NIH HHS SC1 HL112630
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a progressive lung disease with a life expectancy of less than 5 years post diagnosis for most patients. Poor molecular characterization of IPF has led to insufficient understanding of the pathogenesis of the disease, resulting in lack of effective therapies. In this study, we have integrated a label-free LC-MS based approach with systems biology to identify signaling pathways and regulatory nodes within protein interaction networks that govern phenotypic changes that may lead to IPF. Ingenuity Pathway Analysis of proteins modulated in response to bleomycin treatment identified PI3K/Akt and Wnt signaling as the most significant profibrotic pathways. Similar analysis of proteins modulated in response to vascular endothelial growth factor (VEGF) inhibitor (CBO-P11) treatment identified natural killer cell signaling and PTEN signaling as the most significant antifibrotic pathways. Mechanistic/mammalian target of rapamycin (mTOR) and extracellular signal-regulated kinase (ERK) were identified to be key mediators of pro- and antifibrotic response, where bleomycin (BLM) treatment resulted in increased expression and VEGF inhibitor treatment attenuated expression of mTOR and ERK. Using a BLM mouse model of pulmonary fibrosis and VEGF inhibitor CBO-P11 as a therapeutic measure, we identified a comprehensive set of signaling pathways and proteins that contribute to the pathogenesis of pulmonary fibrosis that can be targeted for therapy against this fatal disease.

Indexed as

BleomycinProtein Interaction MapsSignal TransductionAdherens JunctionsAnimalsCell LineEndothelial Growth FactorsHumansIdiopathic Pulmonary FibrosisMiceMice, Inbred C57BLPeptides, CyclicPhosphatidylinositol 3-KinasesProtein Serine-Threonine KinasesProteomicsProto-Oncogene Proteins c-aktBleomycincyclo-VEGIEndothelial Growth FactorsPeptides, CyclicPhosphatidylinositol 3-KinasesProtein Serine-Threonine KinasesProto-Oncogene Proteins c-aktPTEN PhosphohydrolasePTEN protein, humanScaffold Protein ILKVascular Endothelial Growth Factor ABLM mouse modelHigh-throughput proteomicsIngenuity Pathway AnalysisPulmonary fibrosisSystems biologyVEGF inhibitor

Identifiers

PMID26425798
PMCPMC4703486
OpenAlexW1934376884

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.