Evidence map›Paper›PMID 26424850›Full record

ArticleNucleic acids research2016

Femtosecond near-infrared laser microirradiation reveals a crucial role for PARP signaling on factor assemblies at DNA damage sites.

Gladys Mae Saquilabon Cruz, Xiangduo Kong, Bárbara Alcaraz Silva, Nima Khatibzadeh, Ryan Thai, Michael W Berns, Kyoko Yokomori

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Dissection of DNA damage and repair pathways in live cells by femtosecond laser microirradiation and free-electron modeling.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Laser Scissors and Tweezers to Study Chromosomes: A Review.Frontiers in bioengineering and biotechnology · 2020
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Gladys Mae Saquilabon CruzBeckman Laser Institute and Medical Clinic, University of California, Irvine, 1002 Health Sciences Road East, Irvine, CA 92612, USA.
Xiangduo KongDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697-1700, USA.
Bárbara Alcaraz SilvaBeckman Laser Institute and Medical Clinic, University of California, Irvine, 1002 Health Sciences Road East, Irvine, CA 92612, USA Department of Developmental and Cell Biology, School of Biological Sciences, University of California, Irvine, CA 92617, USA.
Nima KhatibzadehBeckman Laser Institute and Medical Clinic, University of California, Irvine, 1002 Health Sciences Road East, Irvine, CA 92612, USA.
Ryan ThaiDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697-1700, USA.
Michael W BernsBeckman Laser Institute and Medical Clinic, University of California, Irvine, 1002 Health Sciences Road East, Irvine, CA 92612, USA Department of Developmental and Cell Biology, School of Biological Sciences, University of California, Irvine, CA 92617, USA Department of Biomedical Engineering and Surgery, University of California, Irvine, CA 92617, USA mwberns@uci.edu.
Kyoko YokomoriDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697-1700, USA kyokomor@uci.edu.
University of California, Irvine · USBeckman Laser Institute and Medical Clinic · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Laser microirradiation is a powerful tool for real-time single-cell analysis of the DNA damage response (DDR). It is often found, however, that factor recruitment or modification profiles vary depending on the laser system employed. This is likely due to an incomplete understanding of how laser conditions/dosages affect the amounts and types of damage and the DDR. We compared different irradiation conditions using a femtosecond near-infrared laser and found distinct damage site recruitment thresholds for 53BP1 and TRF2 correlating with the dose-dependent increase of strand breaks and damage complexity. Low input-power microirradiation that induces relatively simple strand breaks led to robust recruitment of 53BP1 but not TRF2. In contrast, increased strand breaks with complex damage including crosslinking and base damage generated by high input-power microirradiation resulted in TRF2 recruitment to damage sites with no 53BP1 clustering. We found that poly(ADP-ribose) polymerase (PARP) activation distinguishes between the two damage states and that PARP activation is essential for rapid TRF2 recruitment while suppressing 53BP1 accumulation at damage sites. Thus, our results reveal that careful titration of laser irradiation conditions allows induction of varying amounts and complexities of DNA damage that are gauged by differential PARP activation regulating protein assembly at the damage site.

Indexed as

DNA DamageLasersSignal TransductionCell LineHumansIntracellular Signaling Peptides and ProteinsPoly(ADP-ribose) PolymerasesTelomeric Repeat Binding Protein 2Tumor Suppressor p53-Binding Protein 1Intracellular Signaling Peptides and ProteinsPoly(ADP-ribose) PolymerasesTelomeric Repeat Binding Protein 2TERF2 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1

Identifiers

PMID26424850
PMCPMC4756852
OpenAlexW2233883998

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.