Evidence map›Paper›PMID 26423580›Full record

ArticleOpen biology2015

Purification, characterization and crystallization of the F-ATPase from Paracoccus denitrificans.

Edgar Morales-Rios, Ian N Watt, Qifeng Zhang, Shujing Ding, Ian M Fearnley, Martin G Montgomery, Michael J O Wakelam, John E Walker

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. FInternational journal of molecular sciences · 2023
    Review
  3. ATP synthase FCellular and molecular life sciences : CMLS · 2022
    Review
  4. Review
  5. Article
  6. Article
  7. Cardiolipin binds selectively but transiently to conserved lysine residues in the rotor of metazoan ATP synthases.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  8. Structure of ATP synthase from Paracoccus denitrificans determined by X-ray crystallography at 4.0 Å resolution.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Edgar Morales-RiosThe Medical Research Council Mitochondrial Biology Unit, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Ian N WattThe Medical Research Council Mitochondrial Biology Unit, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Qifeng ZhangThe Babraham Institute, Cambridge CB22 3AT, UK.
Shujing DingThe Medical Research Council Mitochondrial Biology Unit, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Ian M FearnleyThe Medical Research Council Mitochondrial Biology Unit, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Martin G MontgomeryThe Medical Research Council Mitochondrial Biology Unit, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Michael J O WakelamThe Babraham Institute, Cambridge CB22 3AT, UK.
John E WalkerThe Medical Research Council Mitochondrial Biology Unit, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK walker@mrc-mbu.cam.ac.uk.
Medical Research Council · GBMRC Mitochondrial Biology Unit · GBBabraham Institute · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council MC_EX_MR/M009858/1Medical Research Council MC_U105663150Medical Research Council U105663150
6 · The paper itself

Abstract

The structures of F-ATPases have been determined predominantly with mitochondrial enzymes, but hitherto no F-ATPase has been crystallized intact. A high-resolution model of the bovine enzyme built up from separate sub-structures determined by X-ray crystallography contains about 85% of the entire complex, but it lacks a crucial region that provides a transmembrane proton pathway involved in the generation of the rotary mechanism that drives the synthesis of ATP. Here the isolation, characterization and crystallization of an integral F-ATPase complex from the α-proteobacterium Paracoccus denitrificans are described. Unlike many eubacterial F-ATPases, which can both synthesize and hydrolyse ATP, the P. denitrificans enzyme can only carry out the synthetic reaction. The mechanism of inhibition of its ATP hydrolytic activity involves a ζ inhibitor protein, which binds to the catalytic F₁-domain of the enzyme. The complex that has been crystallized, and the crystals themselves, contain the nine core proteins of the complete F-ATPase complex plus the ζ inhibitor protein. The formation of crystals depends upon the presence of bound bacterial cardiolipin and phospholipid molecules; when they were removed, the complex failed to crystallize. The experiments open the way to an atomic structure of an F-ATPase complex.

Indexed as

Adenosine TriphosphateBacterial ProteinsCrystallizationElectrophoresis, Polyacrylamide GelMass SpectrometryParacoccus denitrificansProtein BindingProtein SubunitsProton-Translocating ATPasesAdenosine TriphosphateBacterial ProteinsProtein SubunitsProton-Translocating ATPasescardiolipincrystallizationF-ATPaseParacoccus denitrificanssubunitsα-proteobacteria

Identifiers

PMID26423580
PMCPMC4593670
OpenAlexW2283906920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.