Evidence map›Paper›PMID 26422511›Full record

ArticleeLife2015

Distinct mechanisms define murine B cell lineage immunoglobulin heavy chain (IgH) repertoires.

Yang Yang, Chunlin Wang, Qunying Yang, Aaron B Kantor, Hiutung Chu, Eliver Eb Ghosn, Guang Qin, Sarkis K Mazmanian, Jian Han, Leonore A Herzenberg

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 144 citations in OpenAlex.

  1. Article
  2. Do human B-1 lymphocytes truly exist?Frontiers in immunology · 2026
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  5. Posttranscriptional control of the B cell receptor by HuR is essential for innate B cell maintenance and function.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  7. The transcription factor Bcl11a is essential for B-1a cell maintenance during aging.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Tipping the Scale: Atheroprotective IgM-Producing B Cells in Atherosclerosis.Arteriosclerosis, thrombosis, and vascular biology · 2024
    Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Noncanonical B Cells: Characteristics of Uncharacteristic B Cells.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Yang YangGenetics Department, Stanford University, Stanford, United States.
Chunlin WangHudsonAlpha Institute for Biotechnology, Huntsville, United States.
Qunying YangHudsonAlpha Institute for Biotechnology, Huntsville, United States.
Aaron B KantorGenetics Department, Stanford University, Stanford, United States.
Hiutung ChuBiology and Biological Engineering Department, California Institute of Technology, Pasadena, United States.
Eliver Eb GhosnGenetics Department, Stanford University, Stanford, United States.
Guang QinGenetics Department, Stanford University, Stanford, United States.
Sarkis K MazmanianBiology and Biological Engineering Department, California Institute of Technology, Pasadena, United States.
Jian HanHudsonAlpha Institute for Biotechnology, Huntsville, United States.
Leonore A HerzenbergGenetics Department, Stanford University, Stanford, United States.
HudsonAlpha Institute for Biotechnology · USStanford University · USCalifornia Institute of Technology · US

Funding

Protection from Mucosal Pathology by Gut Microflora during Experimental ColitisR01DK078938 · NIDDK · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI MAZMANIAN, SARKIS K · 2009 to 2020
$5.1M
NIDDK NIH HHS R01 DK078938NIDDK NIH HHS R01-DK078938PHS HHS R01-AL1076434
6 · The paper itself

Abstract

Processes that define immunoglobulin repertoires are commonly presumed to be the same for all murine B cells. However, studies here that couple high-dimensional FACS sorting with large-scale quantitative IgH deep-sequencing demonstrate that B-1a IgH repertoire differs dramatically from the follicular and marginal zone B cells repertoires and is defined by distinct mechanisms. We track B-1a cells from their early appearance in neonatal spleen to their long-term residence in adult peritoneum and spleen. We show that de novo B-1a IgH rearrangement mainly occurs during the first few weeks of life, after which their repertoire continues to evolve profoundly, including convergent selection of certain V(D)J rearrangements encoding specific CDR3 peptides in all adults and progressive introduction of hypermutation and class-switching as animals age. This V(D)J selection and AID-mediated diversification operate comparably in germ-free and conventional mice, indicating these unique B-1a repertoire-defining mechanisms are driven by antigens that are not derived from microbiota.

Indexed as

Genetic VariationAnimalsB-LymphocytesGene Rearrangement, B-LymphocyteHigh-Throughput Nucleotide SequencingImmunoglobulin Heavy ChainsMicePeritoneumSpleenImmunoglobulin Heavy Chainscell biologydiversifyIgHimmunologymouseV(D)J

Identifiers

PMID26422511
PMCPMC4714975
OpenAlexW2149578241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.