Evidence map›Paper›PMID 26422469›Full record

ArticlePloS one2015

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas.

Kelle C Freel, Martin C Krueger, Julien Farasin, Céline Brochier-Armanet, Valérie Barbe, Jeremy Andrès, Pierre-Etienne Cholley, Marie-Agnès Dillies, Bernd Jagla, Sandrine Koechler and 8 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Mixotrophic Iron-OxidizingApplied and environmental microbiology · 2020
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  8. Draft Genome Sequence ofGenome announcements · 2017
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  9. Article
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  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 2 countries.

Kelle C FreelLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Martin C KruegerDepartment Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Julien FarasinLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Céline Brochier-ArmanetUniversité de Lyon, Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Évolutive, Villeurbanne, France.
Valérie BarbeLaboratoire de Biologie Moléculaire pour l'Etude des Génomes, (LBioMEG), CEA-IG-Genoscope, Evry, France.
Jeremy AndrèsLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Pierre-Etienne CholleyLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Marie-Agnès DilliesPlate-Forme Transcriptome et Epigénome, Centre d'Innovation et de Recherche Technologique-Département Génomes et Génétique, Institut Pasteur, Paris, France.
Bernd JaglaPlate-Forme Transcriptome et Epigénome, Centre d'Innovation et de Recherche Technologique-Département Génomes et Génétique, Institut Pasteur, Paris, France.
Sandrine KoechlerLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Yann LevaUniversité de Haute-Alsace, Biopôle-LVBE, Colmar, France.
Ghislaine MagdelenatLaboratoire de Biologie Moléculaire pour l'Etude des Génomes, (LBioMEG), CEA-IG-Genoscope, Evry, France.
Frédéric PlewniakLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Caroline ProuxPlate-Forme Transcriptome et Epigénome, Centre d'Innovation et de Recherche Technologique-Département Génomes et Génétique, Institut Pasteur, Paris, France.
Jean-Yves CoppéePlate-Forme Transcriptome et Epigénome, Centre d'Innovation et de Recherche Technologique-Département Génomes et Génétique, Institut Pasteur, Paris, France.
Philippe N BertinLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Hermann J HeipieperDepartment Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Florence Arsène-PloetzeLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, CNRS-Université de Strasbourg, Département Microorganismes, Génomes, Environnement, Equipe Ecophysiologie Moléculaire des Microorganismes, Institut de Botanique, Strasbourg, France.
Centre National de la Recherche Scientifique · FRInstitut Pasteur · FRUniversité de Strasbourg · FRGénétique Moléculaire Génomique Microbiologie · FRHelmholtz Centre for Environmental Research · DECommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRGenoscope · FRUniversité de Haute-Alsace · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acid mine drainage (AMD) is a highly toxic environment for most living organisms due to the presence of many lethal elements including arsenic (As). Thiomonas (Tm.) bacteria are found ubiquitously in AMD and can withstand these extreme conditions, in part because they are able to oxidize arsenite. In order to further improve our knowledge concerning the adaptive capacities of these bacteria, we sequenced and assembled the genome of six isolates derived from the Carnoulès AMD, and compared them to the genomes of Tm. arsenitoxydans 3As (isolated from the same site) and Tm. intermedia K12 (isolated from a sewage pipe). A detailed analysis of the Tm. sp. CB2 genome revealed various rearrangements had occurred in comparison to what was observed in 3As and K12 and over 20 genomic islands (GEIs) were found in each of these three genomes. We performed a detailed comparison of the two arsenic-related islands found in CB2, carrying the genes required for arsenite oxidation and As resistance, with those found in K12, 3As, and five other Thiomonas strains also isolated from Carnoulès (CB1, CB3, CB6, ACO3 and ACO7). Our results suggest that these arsenic-related islands have evolved differentially in these closely related Thiomonas strains, leading to divergent capacities to survive in As rich environments.

Indexed as

ArsenicGenome, BacterialWater MicrobiologyBurkholderiaceaeArsenic

Identifiers

PMID26422469
PMCPMC4589449
OpenAlexW2338595949

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.