Evidence map›Paper›PMID 26421724›Full record

ArticlePloS one2015

Interactions of L-3,5,3'-Triiodothyronine [corrected], Allopregnanolone, and Ivermectin with the GABAA Receptor: Evidence for Overlapping Intersubunit Binding Modes.

Thomas Westergard, Reza Salari, Joseph V Martin, Grace Brannigan

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Thomas WestergardDepartment of Neuroscience, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America; Center for Computational and Integrative Biology, Rutgers University-Camden, Camden, New Jersey, United States of America.
Reza SalariCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, New Jersey, United States of America; Department of Physics, Rutgers University-Camden, Camden, New Jersey, United States of America.
Joseph V MartinCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, New Jersey, United States of America; Department of Biology, Rutgers University-Camden, Camden, New Jersey, United States of America.
Grace BranniganCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, New Jersey, United States of America; Department of Physics, Rutgers University-Camden, Camden, New Jersey, United States of America.
Rutgers, The State University of New Jersey · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural mechanisms of modulation of γ-aminobutyric acid (GABA) type A receptors by neurosteroids and hormones remain unclear. The thyroid hormone L-3,5,3'-triiodothyronine (T3) inhibits GABAA receptors at micromolar concentrations and has common features with neurosteroids such as allopregnanolone (ALLOP). Here we use functional experiments on α2β1γ2 GABAA receptors expressed in Xenopus oocytes to detect competitive interactions between T3 and an agonist (ivermectin, IVM) with a crystallographically determined binding site at subunit interfaces in the transmembrane domain of a homologous receptor (glutamate-gated chloride channel, GluCl). T3 and ALLOP also show competitive effects, supporting the presence of both a T3 and ALLOP binding site at one or more subunit interfaces. Molecular dynamics (MD) simulations over 200 ns are used to investigate the dynamics and energetics of T3 in the identified intersubunit sites. In these simulations, T3 molecules occupying all intersubunit sites (with the exception of the α-β interface) display numerous energetically favorable conformations with multiple hydrogen bonding partners, including previously implicated polar/acidic sidechains and a structurally conserved deformation in the M1 backbone.

Indexed as

Allosteric RegulationAnimalsBinding, CompetitiveDrug InteractionsElectrophysiological PhenomenaFemaleGABA-A Receptor AntagonistsHumansIvermectinLipid BilayersMolecular Docking SimulationMolecular Dynamics SimulationPregnanoloneProtein BindingProtein ConformationProtein SubunitsGABA-A Receptor AntagonistsIvermectinLipid BilayersPregnanoloneProtein SubunitsReceptors, GABA-ATriiodothyronine

Identifiers

PMID26421724
PMCPMC4589331
OpenAlexW2106116921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.