Evidence map›Paper›PMID 26420830›Full record

ArticleNucleic acids research2016

DnaC traps DnaB as an open ring and remodels the domain that binds primase.

Sundari Chodavarapu, A Daniel Jones, Michael Feig, Jon M Kaguni

Abstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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  20. Assessing heterogeneity in oligomeric AAA+ machines.Cellular and molecular life sciences : CMLS · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sundari ChodavarapuDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824-1319, USA.
A Daniel JonesDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824-1319, USA Department of Chemistry, Michigan State University, East Lansing, MI 48824-1319, USA.
Michael FeigDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824-1319, USA Department of Chemistry, Michigan State University, East Lansing, MI 48824-1319, USA.
Jon M KaguniDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824-1319, USA kaguni@msu.edu.

Funding

Protein structure refinement through effective sampling and scoringR01GM084953 · NIGMS · MICHIGAN STATE UNIVERSITY · PI FEIG, MICHAEL · 2008 to 2017
$2.5M
Multiscale modeling of supramolecular protein-DNA assembliesR01GM092949 · NIGMS · MICHIGAN STATE UNIVERSITY · PI FEIG, MICHAEL · 2010 to 2013
$1.1M
Recruitment and activation of DnaB helicase in Escherichia coli DNA replicationR01GM090063 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KAGUNI, JON M · 2011 to 2014
$1.0M
NIGMS NIH HHS R01 GM084953NIGMS NIH HHS R01 GM090063NIGMS NIH HHS R01 GM092949
6 · The paper itself

Abstract

Helicase loading at a DNA replication origin often requires the dynamic interactions between the DNA helicase and an accessory protein. In E. coli, the DNA helicase is DnaB and DnaC is its loading partner. We used the method of hydrogen/deuterium exchange mass spectrometry to address the importance of DnaB-DnaC complex formation as a prerequisite for helicase loading. Our results show that the DnaB ring opens and closes, and that specific amino acids near the N-terminus of DnaC interact with a site in DnaB's C-terminal domain to trap it as an open ring. This event correlates with conformational changes of the RecA fold of DnaB that is involved in nucleotide binding, and of the AAA+ domain of DnaC. DnaC also causes an alteration of the helical hairpins in the N-terminal domain of DnaB, presumably occluding this region from interacting with primase. Hence, DnaC controls the access of DnaB by primase.

Indexed as

Protein Interaction Domains and MotifsAmino Acid MotifsBacterial ProteinsBinding SitesDnaB HelicasesDNA PrimaseModels, MolecularPeptidesProtein BindingProtein ConformationProtein Structure, SecondaryBacterial ProteinsDnaB HelicasesDNA PrimasePeptides

Identifiers

PMID26420830
PMCPMC4705694

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.