Evidence map›Paper›PMID 26420828›Full record

ArticleNucleic acids research2016

DNA double-strand breaks with 5' adducts are efficiently channeled to the DNA2-mediated resection pathway.

Margaret Tammaro, Shuren Liao, Neil Beeharry, Hong Yan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Margaret TammaroFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Shuren LiaoFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Neil BeeharryFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Hong YanFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA Hong.Yan@fccc.edu.
Fox Chase Cancer Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Werner Syndrome Protein, DNA End Processing, and Double-Strand Break RepairR01GM057962 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI YAN, HONG · 1998 to 2015
$4.5M
NCI NIH HHS P30 CA006927NIGMS NIH HHS R01 GM057962NIGMS NIH HHS R01 GM57962
6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) with 5' adducts are frequently formed from many nucleic acid processing enzymes, in particular DNA topoisomerase 2 (TOP2). The key intermediate of TOP2 catalysis is the covalent complex (TOP2cc), consisting of two TOP2 subunits covalently linked to the 5' ends of the nicked DNA. In cells, TOP2ccs can be trapped by cancer drugs such as etoposide and then converted into DNA double-strand breaks (DSBs) that carry adducts at the 5' end. The repair of such DSBs is critical to the survival of cells, but the underlying mechanism is still not well understood. We found that etoposide-induced DSBs are efficiently resected into 3' single-stranded DNA in cells and the major nuclease for resection is the DNA2 protein. DNA substrates carrying model 5' adducts were efficiently resected in Xenopus egg extracts and immunodepletion of Xenopus DNA2 also strongly inhibited resection. These results suggest that DNA2-mediated resection is a major mechanism for the repair of DSBs with 5' adducts.

Indexed as

DNA AdductsDNA Breaks, Double-StrandedDNA RepairAnimalsCell Line, TumorCell ProliferationDNA, Single-StrandedDNA Topoisomerases, Type IIEtoposideGene ExpressionGene Knockdown TechniquesHumansRNA, Small InterferingXenopusDNA AdductsDNA, Single-StrandedDNA Topoisomerases, Type IIEtoposideRNA, Small Interfering

Identifiers

PMID26420828
PMCPMC4705695
OpenAlexW1670117012

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.