Evidence map›Paper›PMID 26420301›Full record

ArticleVirology journal2015

Hepatitis B surface gene variants isolated from blood donors with overt and occult HBV infection in north eastern Egypt.

Rania Kishk, Nader Nemr, Abeer Elkady, Mohamed Mandour, Mohamed Aboelmagd, Nevene Ramsis, Mohamed Hassan, Nashaat Soliman, Sayuki Iijima, Shuko Murakami and 2 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Occult Hepatitis Infection in Transfusion Medicine: Screening Policy and Assessment of Current Use of Anti-HBc Testing.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2017
    Review
  10. Update on occult hepatitis B virus infection.World journal of gastroenterology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Rania KishkDepartment of Microbiology and Immunology, Faculty of Medicine, Suez Canal University, El Salam District, Ismaïlia, Egypt. rankishk@yahoo.com.
Nader NemrDepartment of Endemic and Infectious diseases, Faculty of Medicine, Suez Canal University, El Salam District, Ismaïlia, Egypt. nadernemr95@yahoo.com.
Abeer ElkadyDepartment of Clinical and Chemical Pathology, Faculty of Medicine, South Valley University, Qena, Egypt. abeer.elkady@gmail.com.
Mohamed MandourDepartment of Clinical Pathology, Faculty of Medicine, Suez Canal University, El Salam District, Ismaïlia, Egypt. m.fouad452006@yahoo.com.
Mohamed AboelmagdDepartment of Endemic and Infectious diseases, Faculty of Medicine, Suez Canal University, El Salam District, Ismaïlia, Egypt. aboelmagd_tm@yahoo.com.
Nevene RamsisDepartment of Clinical Pathology, Faculty of Medicine, Suez Canal University, El Salam District, Ismaïlia, Egypt. nramsis@hotmail.com.
Mohamed HassanDepartment of Endemic and Infectious diseases, Faculty of Medicine, Suez Canal University, El Salam District, Ismaïlia, Egypt. mfmhassan666@yahoo.com.
Nashaat SolimanDepartment of Endemic and Infectious diseases, Faculty of Medicine, Suez Canal University, El Salam District, Ismaïlia, Egypt. nhawass@yahoo.com.
Sayuki IijimaDepartment of Virology and Liver Unit, Nagoya City University Graduate School of Medical Science, Nagoya, 467-8601, Japan. iijima@med.nagoya-cu.ac.jp.
Shuko MurakamiDepartment of Virology and Liver Unit, Nagoya City University Graduate School of Medical Science, Nagoya, 467-8601, Japan. s.mura@med.nagoya-cu.ac.jp.
Yasuhito TanakaDepartment of Virology and Liver Unit, Nagoya City University Graduate School of Medical Science, Nagoya, 467-8601, Japan. ytanaka@med.nagoya-cu.ac.jp.
Mostafa RaghebDepartment of Internal Medicine, Faculty of Medicine, Aljouf University, Sakaka, KSA, Saudi Arabia. mosragh2001@hotmail.com.
Suez Canal University · EGNagoya City University · JPJouf University · SASouth Valley University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMajor hydrophilic region in genomic HBV extending from aa99 to aa169, clustered with a highly conformational epitope, is critical to the antigenicity of hepatitis B surface antigen (HBsAg) and may affect the diagnosis of HBV in HBV screening test. So, this study aimed to characterize variants of S gene product of hepatitis B virus (HBV) isolated from patients with overt or occult HBV infection in north-eastern Egypt.

methodsThe study included sera of two different groups of volunteer blood donors (VBDs), 82 with overt HBV that were positive for HBsAg and anti-HBc and 343 donors negative for HBsAg eligible for donation. Of the latter group, only 44 were positive for anti-HBc. All anti-HBc positive sera were subjected to HBV DNA detection and partial sequence analysis targeting the HBV S gene.

resultsHBV DNA was detected in 22.7 % of HBsAg-/anti-HBc + (10/44 patients) and in 90 % of HBsAg + donors (74/82 patients) with significant statistical difference (P = 0.0001). Phylogenetic analysis showed that HBV strains retrieved from both groups were of genotype D. Amino acid escape mutation T125M was detected in only 2 samples of the occult infection group and in none of the overt group (P = 0.01). Different amino acid substitutions were identified in overt infection group: S143L/T (16.2 %, 12/74) and P120T/S (2.7 %, 2/74). Q129R was significantly more frequent in cases with occult HBV infection (40 %, 4/10) than overt group (6.8 %, 5/74) (P = 0.01).

conclusionsHBV genotype D predominated both in patients with overt and occult HBV infection. Different profiles of amino acid substitutions in the major hydrophilic region were seen in these two groups in Egypt.

Indexed as

Blood DonorsGenetic VariationAdultAmino Acid SubstitutionDNA, ViralEgyptFemaleGenotypeHepatitis B AntibodiesHepatitis B Surface AntigensHepatitis B virusHumansMaleMiddle AgedMolecular Sequence DataMutation, MissenseDNA, ViralHepatitis B AntibodiesHepatitis B Surface Antigens

Identifiers

PMID26420301
PMCPMC4588243
OpenAlexW2121166562

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.