Evidence map›Paper›PMID 26417993›Full record

ArticlePloS one2015

The Application of DNA Barcodes for the Identification of Marine Crustaceans from the North Sea and Adjacent Regions.

Michael J Raupach, Andrea Barco, Dirk Steinke, Jan Beermann, Silke Laakmann, Inga Mohrbeck, Hermann Neumann, Terue C Kihara, Karin Pointner, Adriana Radulovici and 3 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Article
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  16. Molecular features ofParasitology · 2022
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  17. Article
  18. First record ofJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2021
    Article
  19. Article
  20. DNA Barcoding of Two Thymelaeaceae Species:Plants (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Michael J RaupachGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Andrea BarcoGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Dirk SteinkeBiodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, Canada.
Jan BeermannAlfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Biologische Anstalt Helgoland, Helgoland, Schleswig-Holstein, Germany.
Silke LaakmannGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Inga MohrbeckGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Hermann NeumannDepartment for Marine Research, Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Terue C KiharaGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Karin PointnerGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Adriana RaduloviciBiodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, Canada.
Alexandra Segelken-VoigtAnimal Biodiversity and Evolutionary Biology, Institute for Biology and Environmental Sciences, V. School of Mathematics and Science, Carl von Ossietzky University Oldenburg, Oldenburg, Niedersachsen, Germany.
Christina WesseGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.
Thomas KnebelsbergerGerman Center of Marine Biodiversity (DZMB), Senckenberg am Meer, Wilhelmshaven, Niedersachsen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the last years DNA barcoding has become a popular method of choice for molecular specimen identification. Here we present a comprehensive DNA barcode library of various crustacean taxa found in the North Sea, one of the most extensively studied marine regions of the world. Our data set includes 1,332 barcodes covering 205 species, including taxa of the Amphipoda, Copepoda, Decapoda, Isopoda, Thecostraca, and others. This dataset represents the most extensive DNA barcode library of the Crustacea in terms of species number to date. By using the Barcode of Life Data Systems (BOLD), unique BINs were identified for 198 (96.6%) of the analyzed species. Six species were characterized by two BINs (2.9%), and three BINs were found for the amphipod species Gammarus salinus Spooner, 1947 (0.4%). Intraspecific distances with values higher than 2.2% were revealed for 13 species (6.3%). Exceptionally high distances of up to 14.87% between two distinct but monophyletic clusters were found for the parasitic copepod Caligus elongatus Nordmann, 1832, supporting the results of previous studies that indicated the existence of an overlooked sea louse species. In contrast to these high distances, haplotype-sharing was observed for two decapod spider crab species, Macropodia parva Van Noort & Adema, 1985 and Macropodia rostrata (Linnaeus, 1761), underlining the need for a taxonomic revision of both species. Summarizing the results, our study confirms the application of DNA barcodes as highly effective identification system for the analyzed marine crustaceans of the North Sea and represents an important milestone for modern biodiversity assessment studies using barcode sequences.

Indexed as

AnimalsCrustaceaDNA Barcoding, TaxonomicDNA, MitochondrialDNA PrimersElectron Transport Complex IVGenetic VariationModels, GeneticMolecular Sequence DataPhylogenyPolymerase Chain ReactionReproducibility of ResultsSequence Analysis, DNASpecies SpecificityDNA, MitochondrialDNA PrimersElectron Transport Complex IV

Identifiers

PMID26417993
PMCPMC4587929

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.