Evidence map›Paper›PMID 26417545›Full record

ArticlePeerJ2015

Intrinsically disordered caldesmon binds calmodulin via the "buttons on a string" mechanism.

Sergei E Permyakov, Eugene A Permyakov, Vladimir N Uversky

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. The Hydrophilic Loop ofInternational journal of molecular sciences · 2022
    Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Sergei E PermyakovProtein Research Group, Institute for Biological Instrumentation, Russian Academy of Sciences , Pushchino, Moscow Region , Russia.
Eugene A PermyakovProtein Research Group, Institute for Biological Instrumentation, Russian Academy of Sciences , Pushchino, Moscow Region , Russia.
Vladimir N UverskyProtein Research Group, Institute for Biological Instrumentation, Russian Academy of Sciences , Pushchino, Moscow Region , Russia ; Department of Molecular Medicine, University of South Florida , Tampa, FL , USA.
Institute for Biological Instrumentation · RUInstitute of Protein Research · RUUniversity of South Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We show here that chicken gizzard caldesmon (CaD) and its C-terminal domain (residues 636-771, CaD136) are intrinsically disordered proteins. The computational and experimental analyses of the wild type CaD136 and series of its single tryptophan mutants (W674A, W707A, and W737A) and a double tryptophan mutant (W674A/W707A) suggested that although the interaction of CaD136 with calmodulin (CaM) can be driven by the non-specific electrostatic attraction between these oppositely charged molecules, the specificity of CaD136-CaM binding is likely to be determined by the specific packing of important CaD136 tryptophan residues at the CaD136-CaM interface. It is suggested that this interaction can be described as the "buttons on a charged string" model, where the electrostatic attraction between the intrinsically disordered CaD136 and the CaM is solidified in a "snapping buttons" manner by specific packing of the CaD136 "pliable buttons" (which are the short segments of fluctuating local structure condensed around the tryptophan residues) at the CaD136-CaM interface. Our data also show that all three "buttons" are important for binding, since mutation of any of the tryptophans affects CaD136-CaM binding and since CaD136 remains CaM-buttoned even when two of the three tryptophans are mutated to alanines.

Indexed as

CaldesmonCalmodulinIntrinsically disordered proteinMolecular Recognition Feature (MoRF).Protein–protein interaction

Identifiers

PMID26417545
PMCPMC4582948
OpenAlexW1945769600

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.