Evidence map›Paper›PMID 26417023›Full record

ArticleJournal of experimental botany2015

Kranz and single-cell forms of C4 plants in the subfamily Suaedoideae show kinetic C4 convergence for PEPC and Rubisco with divergent amino acid substitutions.

Josh J Rosnow, Marc A Evans, Maxim V Kapralov, Asaph B Cousins, Gerald E Edwards, Eric H Roalson

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Exploring molecular evolution of Rubisco in CBMC evolutionary biology · 2020
    Article
  6. Evolutionary Convergence of CFrontiers in plant science · 2020
    Article
  7. Kinetic Modifications of CFrontiers in plant science · 2020
    Article
  8. Review
  9. Article
  10. Article
  11. EfficientFrontiers in plant science · 2019
    Article
  12. Article
  13. Frontiers in plant science · 2017
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Josh J RosnowSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA.
Marc A EvansDepartment of Mathematics, Washington State University, Pullman, WA 99164-3113, USA.
Maxim V KapralovSchool of Natural Sciences and Psychology, Liverpool John Moores University, Liverpool L3 3AF, UK.
Asaph B CousinsSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA.
Gerald E EdwardsSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA eric_roalson@wsu.edu edwardsg@wsu.edu.
Eric H RoalsonSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA eric_roalson@wsu.edu edwardsg@wsu.edu.
Washington State University · USLiverpool John Moores University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The two carboxylation reactions performed by phosphoenolpyruvate carboxylase (PEPC) and ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) are vital in the fixation of inorganic carbon for C4 plants. The abundance of PEPC is substantially elevated in C4 leaves, while the location of Rubisco is restricted to one of two chloroplast types. These differences compared with C3 leaves have been shown to result in convergent enzyme optimization in some C4 species. Investigation into the kinetic properties of PEPC and Rubisco from Kranz C4, single cell C4, and C3 species in Chenopodiaceae s. s. subfamily Suaedoideae showed that these major carboxylases in C4 Suaedoideae species lack the same mutations found in other C4 systems which have been examined; but still have similar convergent kinetic properties. Positive selection analysis on the N-terminus of PEPC identified residues 364 and 368 to be under positive selection with a posterior probability >0.99 using Bayes empirical Bayes. Compared with previous analyses on other C4 species, PEPC from C4 Suaedoideae species have different convergent amino acids that result in a higher K m for PEP and malate tolerance compared with C3 species. Kinetic analysis of Rubisco showed that C4 species have a higher catalytic efficiency of Rubisco (k catc in mol CO2 mol(-1) Rubisco active sites s(-1)), despite lacking convergent substitutions in the rbcL gene. The importance of kinetic changes to the two-carboxylation reactions in C4 leaves related to amino acid selection is discussed.

Indexed as

Carbon CyclePhotosynthesisAmino Acid SubstitutionBiological EvolutionCarbonChenopodiaceaeKineticsPhosphoenolpyruvate CarboxylaseRibulose-Bisphosphate CarboxylaseSpecies SpecificityCarbonPhosphoenolpyruvate CarboxylaseRibulose-Bisphosphate CarboxylaseBienertiaC4 photosynthesisPAMLphosphoenolpyruvate carboxylasepositive selection analysisRubiscoSuaedoideae.

Identifiers

PMID26417023
PMCPMC4765798
OpenAlexW2257155574

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.