Evidence map›Paper›PMID 26417009›Full record

ArticlePlant physiology2015

Functional Analysis of the Arabidopsis TETRASPANIN Gene Family in Plant Growth and Development.

Feng Wang, Antonella Muto, Jan Van de Velde, Pia Neyt, Kristiina Himanen, Klaas Vandepoele, Mieke Van Lijsebettens

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In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 54 citations in OpenAlex.

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  11. TETRASPANIN 8-1 fromFrontiers in plant science · 2023
    Article
  12. Article
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  14. Article
  15. Arabidopsis Tetraspanins Facilitate Virus InfectionFrontiers in plant science · 2022
    Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Feng WangDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.);Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.); andDepartment of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Arcavacata of Rende, Italy (A.M.).
Antonella MutoDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.);Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.); andDepartment of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Arcavacata of Rende, Italy (A.M.).
Jan Van de VeldeDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.);Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.); andDepartment of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Arcavacata of Rende, Italy (A.M.).
Pia NeytDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.);Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.); andDepartment of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Arcavacata of Rende, Italy (A.M.).
Kristiina HimanenDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.);Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.); andDepartment of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Arcavacata of Rende, Italy (A.M.).ORCID http://orcid.org/0000-0003-4975-9467
Klaas VandepoeleDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.);Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.); andDepartment of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Arcavacata of Rende, Italy (A.M.).ORCID http://orcid.org/0000-0003-4790-2725
Mieke Van LijsebettensDepartment of Plant Systems Biology, VIB, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.);Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium (F.W, A.M., J.V.d.V., P.N., K.H., K.V., M.V.L.); andDepartment of Biology, Ecology and Earth Sciences, University of Calabria, 87036 Arcavacata of Rende, Italy (A.M.) mieke.vanlijsebettens@psb.vib-ugent.be.ORCID http://orcid.org/0000-0002-7632-1463
Ghent University · BEVIB-UGent Center for Plant Systems Biology · BEUniversity of Calabria · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TETRASPANIN (TET) genes encode conserved integral membrane proteins that are known in animals to function in cellular communication during gamete fusion, immunity reaction, and pathogen recognition. In plants, functional information is limited to one of the 17 members of the Arabidopsis (Arabidopsis thaliana) TET gene family and to expression data in reproductive stages. Here, the promoter activity of all 17 Arabidopsis TET genes was investigated by pAtTET::NUCLEAR LOCALIZATION SIGNAL-GREEN FLUORESCENT PROTEIN/β-GLUCURONIDASE reporter lines throughout the life cycle, which predicted functional divergence in the paralogous genes per clade. However, partial overlap was observed for many TET genes across the clades, correlating with few phenotypes in single mutants and, therefore, requiring double mutant combinations for functional investigation. Mutational analysis showed a role for TET13 in primary root growth and lateral root development and redundant roles for TET5 and TET6 in leaf and root growth through negative regulation of cell proliferation. Strikingly, a number of TET genes were expressed in embryonic and seedling progenitor cells and remained expressed until the differentiation state in the mature plant, suggesting a dynamic function over developmental stages. The cis-regulatory elements together with transcription factor-binding data provided molecular insight into the sites, conditions, and perturbations that affect TET gene expression and positioned the TET genes in different molecular pathways; the data represent a hypothesis-generating resource for further functional analyses.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsGene Regulatory NetworksGenes, ReporterMultigene FamilyPlant LeavesPlant RootsPlant StomataPromoter Regions, GeneticSeedlingsTetraspaninsArabidopsis ProteinsTetraspanins

Identifiers

PMID26417009
PMCPMC4634101
OpenAlexW2112322272

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.