Evidence map›Paper›PMID 26416882›Full record

ArticleMolecular and cellular biology2015

BRG1 Governs Nanog Transcription in Early Mouse Embryos and Embryonic Stem Cells via Antagonism of Histone H3 Lysine 9/14 Acetylation.

Timothy S Carey, Zubing Cao, Inchul Choi, Avishek Ganguly, Catherine A Wilson, Soumen Paul, Jason G Knott

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Loss of function of ribosomal protein L13a blocks blastocyst formation and reveals a potential nuclear role in gene expression.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Single-cell gene expression of the bovine blastocyst.Reproduction (Cambridge, England) · 2017
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Timothy S CareyDevelopmental Epigenetics Laboratory, Department of Animal Science, Michigan State University, East Lansing, Michigan, USA Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA.
Zubing CaoDevelopmental Epigenetics Laboratory, Department of Animal Science, Michigan State University, East Lansing, Michigan, USA.
Inchul ChoiDevelopmental Epigenetics Laboratory, Department of Animal Science, Michigan State University, East Lansing, Michigan, USA.
Avishek GangulyDepartment of Pathology and Laboratory Medicine, Institute of Reproductive Health and Regenerative Medicine, University of Kansas Medical Center, Kansas City, Kansas, USA.
Catherine A WilsonDevelopmental Epigenetics Laboratory, Department of Animal Science, Michigan State University, East Lansing, Michigan, USA.
Soumen PaulDepartment of Pathology and Laboratory Medicine, Institute of Reproductive Health and Regenerative Medicine, University of Kansas Medical Center, Kansas City, Kansas, USA.
Jason G KnottDevelopmental Epigenetics Laboratory, Department of Animal Science, Michigan State University, East Lansing, Michigan, USA Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA knottj@msu.edu.
Michigan State University · USUniversity of Kansas Medical Center · US

Funding

Stem Cells and Epigenetics of Trophoblast Lineage DevelopmentP01HD079363 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI WOLFE, MICHAEL W · 2014 to 2018
$5.7M
GATA Factor Function in TrophoblastR01HD062546 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Soumen Paul, Geetu Tuteja · 2010 to 2026
$4.9M
Role of Brg1 in Embryo Development and PluripotencyR01GM095347 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KNOTT, JASON GLENN · 2010 to 2013
$1.1M
TEAD4 and Trophoblast LineageR21HD075233 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI PAUL, SOUMEN · 2013 to 2014
$409k
NICHD NIH HHS HD062546NICHD NIH HHS HD075233NICHD NIH HHS HD079363NICHD NIH HHS P01 HD079363NICHD NIH HHS R01 HD062546NICHD NIH HHS R21 HD075233NIGMS NIH HHS GM095347NIGMS NIH HHS R01 GM095347
6 · The paper itself

Abstract

During mouse preimplantation development, the generation of the inner cell mass (ICM) and trophoblast lineages comprises upregulation of Nanog expression in the ICM and its silencing in the trophoblast. However, the underlying epigenetic mechanisms that differentially regulate Nanog in the first cell lineages are poorly understood. Here, we report that BRG1 (Brahma-related gene 1) cooperates with histone deacetylase 1 (HDAC1) to regulate Nanog expression. BRG1 depletion in preimplantation embryos and Cdx2-inducible embryonic stem cells (ESCs) revealed that BRG1 is necessary for Nanog silencing in the trophoblast lineage. Conversely, in undifferentiated ESCs, loss of BRG1 augmented Nanog expression. Analysis of histone H3 within the Nanog proximal enhancer revealed that H3 lysine 9/14 (H3K9/14) acetylation increased in BRG1-depleted embryos and ESCs. Biochemical studies demonstrated that HDAC1 was present in BRG1-BAF155 complexes and BRG1-HDAC1 interactions were enriched in the trophoblast lineage. HDAC1 inhibition triggered an increase in H3K9/14 acetylation and a corresponding rise in Nanog mRNA and protein, phenocopying BRG1 knockdown embryos and ESCs. Lastly, nucleosome-mapping experiments revealed that BRG1 is indispensable for nucleosome remodeling at the Nanog enhancer during trophoblast development. In summary, our data suggest that BRG1 governs Nanog expression via a dual mechanism involving histone deacetylation and nucleosome remodeling.

Indexed as

AcetylationAnimalsBlastocystBlastocyst Inner Cell MassDNA HelicasesEmbryo, MammalianEmbryonic Stem CellsGene Expression Regulation, DevelopmentalHistone Deacetylase 1HistonesHomeodomain ProteinsMiceMultiprotein ComplexesNanog Homeobox ProteinNuclear ProteinsProtein Processing, Post-TranslationalDNA HelicasesHdac1 protein, mouseHistone Deacetylase 1HistonesHomeodomain ProteinsMultiprotein ComplexesNanog Homeobox ProteinNanog protein, mouseNuclear ProteinsRNA, MessengerRNA, Small InterferingSmarca4 protein, mouseSmarcc1 protein, mouseTranscription Factors

Identifiers

PMID26416882
PMCPMC4648823
OpenAlexW2262950395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.