Evidence map›Paper›PMID 26416872›Full record

ArticleAntimicrobial agents and chemotherapy2015

Novel Type XII Staphylococcal Cassette Chromosome mec Harboring a New Cassette Chromosome Recombinase, CcrC2.

Zhaowei Wu, Fan Li, Dongliang Liu, Huping Xue, Xin Zhao

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 105 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Novel Variants of SCCAntibiotics (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Review
  7. Whole-genome analysis of a ST45-SCCFrontiers in cellular and infection microbiology · 2024
    Article
  8. Molecular Mechanisms of Drug Resistance inInternational journal of molecular sciences · 2022
    Review
  9. Current Status of Staphylococcal Cassette ChromosomeAntibiotics (Basel, Switzerland) · 2022
    Review
  10. Article
  11. Emergence of Methicillin-ResistantPathogens (Basel, Switzerland) · 2021
    Article
  12. Characterizing a Novel Staphylococcal Cassette ChromosomeAntimicrobial agents and chemotherapy · 2021
    Article
  13. Genomic Investigation of Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Zhaowei WuCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
Fan LiCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
Dongliang LiuCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
Huping XueCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China xuehuping@hotmail.com xin.zhao@mcgill.ca.
Xin ZhaoCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China Department of Animal Science, McGill University, Ste. Anne de Bellevue, Quebec, Canada xuehuping@hotmail.com xin.zhao@mcgill.ca.
Northwest A&F University · CNMcGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Excision and integration of staphylococcal cassette chromosome mec (SCCmec) are mediated by cassette chromosome recombinases (Ccr), which play a crucial role in the worldwide spread of methicillin resistance in staphylococci. We report a novel ccr gene, ccrC2, in the SCCmec of a Staphylococcus aureus isolate, BA01611, which showed 62.6% to 69.4% sequence identities to all published ccrC1 sequences. A further survey found that the ccrC2 gene was mainly located among coagulase-negative staphylococci (CoNS) and could be found in staphylococcal isolates from China, the United States, France, and Germany. The ccr gene complex harboring the ccrC2 gene was designated a type 9 complex, and the SCCmec of BA01611 was considered a novel type and was designated type XII (9C2). This novel SCCmec element in BA01611 was flanked by a pseudo-SCC element (ΨSCCBA01611) carrying a truncated ccrA1 gene. Both individual SCC elements and a composite SCC were excised from the chromosome based on detection of extrachromosomal circular intermediates. We advocate inclusion of the ccrC2 gene and type 9 ccr gene complex during revision of the SCCmec typing method.

Indexed as

AnimalsAnti-Bacterial AgentsBacterial ProteinsCattleChromosome MappingChromosomes, BacterialDNA, BacterialDNA, CircularFemaleGene ExpressionGenotypeMastitisMethicillinMethicillin ResistanceMethicillin-Resistant Staphylococcus aureusMilkAnti-Bacterial AgentsBacterial ProteinsDNA, BacterialDNA, CircularMethicillinRecombinases

Identifiers

PMID26416872
PMCPMC4649182
OpenAlexW2237652898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.