Evidence map›Paper›PMID 26416747›Full record

ArticleNature2015

In situ structural analysis of the human nuclear pore complex.

Alexander von Appen, Jan Kosinski, Lenore Sparks, Alessandro Ori, Amanda L DiGuilio, Benjamin Vollmer, Marie-Therese Mackmull, Niccolo Banterle, Luca Parca, Panagiotis Kastritis and 10 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 216 papers.

0numbers the graph read from it
0cells of the map it votes in
216citing papers in PubMed
20.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

216 citing papers in PubMed, 441 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. HIV-1 capsid interactions with Nuclear Pore Complex components support nuclear entry via affinity gradient.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Structure, function and assembly of nuclear pore complexes.Nature reviews. Molecular cell biology · 2026
    Review
  16. Review
  17. Article
  18. Article
  19. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
  20. Article

156 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 3 countries.

Alexander von Appen *European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Jan Kosinski *European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Lenore Sparks *European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Alessandro OriEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Amanda L DiGuilioDepartment of Chemistry, Chemical Biology and Biomedical Engineering, Stevens Institute of Technology, 507 River St., Hoboken NJ 07030, USA.
Benjamin VollmerFriedrich Miescher Laboratory of the Max Planck Society, Spemannstrasse 39, 72076 Tübingen, Germany.
Marie-Therese MackmullEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Niccolo BanterleEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Luca ParcaEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Panagiotis KastritisEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Katarzyna BuczakEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Shyamal MosalagantiEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Wim HagenEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Amparo Andres-PonsEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Edward A LemkeEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Peer BorkEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Wolfram AntoninFriedrich Miescher Laboratory of the Max Planck Society, Spemannstrasse 39, 72076 Tübingen, Germany.
Joseph S GlavyDepartment of Chemistry, Chemical Biology and Biomedical Engineering, Stevens Institute of Technology, 507 River St., Hoboken NJ 07030, USA.
Khanh Huy BuiEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Martin BeckEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
European Molecular Biology Laboratory · DEStevens Institute of Technology · USFriedrich Miescher Laboratory · DEMax Planck Society · DEMcGill University · CA

Funding

RecQ DNA Helicase Impact on the Nuclear Pore Complex in Aging CellsR21AG047433 · NIA · THE TRUSTEES OF THE STEVENS INSTITUTE OF TECHNOLOGY · PI GLAVY, JOSEPH STEPHEN · 2014 to 2014
$151k
European Research Council 309271NIA NIH HHS 1R21AG047433-01NIA NIH HHS R21 AG047433
6 · The paper itself

Abstract

Nuclear pore complexes are fundamental components of all eukaryotic cells that mediate nucleocytoplasmic exchange. Determining their 110-megadalton structure imposes a formidable challenge and requires in situ structural biology approaches. Of approximately 30 nucleoporins (Nups), 15 are structured and form the Y and inner-ring complexes. These two major scaffolding modules assemble in multiple copies into an eight-fold rotationally symmetric structure that fuses the inner and outer nuclear membranes to form a central channel of ~60 nm in diameter. The scaffold is decorated with transport-channel Nups that often contain phenylalanine-repeat sequences and mediate the interaction with cargo complexes. Although the architectural arrangement of parts of the Y complex has been elucidated, it is unclear how exactly it oligomerizes in situ. Here we combine cryo-electron tomography with mass spectrometry, biochemical analysis, perturbation experiments and structural modelling to generate, to our knowledge, the most comprehensive architectural model of the human nuclear pore complex to date. Our data suggest previously unknown protein interfaces across Y complexes and to inner-ring complex members. We show that the transport-channel Nup358 (also known as Ranbp2) has a previously unanticipated role in Y-complex oligomerization. Our findings blur the established boundaries between scaffold and transport-channel Nups. We conclude that, similar to coated vesicles, several copies of the same structural building block--although compositionally identical--engage in different local sets of interactions and conformations.

Indexed as

Cryoelectron MicroscopyBinding SitesHeLa CellsHumansMass SpectrometryModels, MolecularMolecular ChaperonesNuclear EnvelopeNuclear PoreNuclear Pore Complex ProteinsProtein ConformationProtein MultimerizationProtein StabilityMolecular ChaperonesNuclear Pore Complex Proteinsran-binding protein 2

Identifiers

PMID26416747
PMCPMC4886846
OpenAlexW2220896177

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.