Evidence map›Paper›PMID 26416667›Full record

ArticleG3 (Bethesda, Md.)2015

Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population.

James Cockram, Alice Scuderi, Toby Barber, Eiko Furuki, Keith A Gardner, Nick Gosman, Radoslaw Kowalczyk, Huyen P Phan, Gemma A Rose, Kar-Chun Tan and 2 more

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Genome-wide association mapping of septoria nodorum blotch resistance in Nordic winter and spring wheat collections.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Fine mapping and gene cloning in the post-NGS era: advances and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  11. Article
  12. Heterologous Expression of theFrontiers in microbiology · 2019
    Article
  13. Article
  14. Assessing European Wheat Sensitivities toFrontiers in plant science · 2018
    Article
  15. Article
  16. Identification ofG3 (Bethesda, Md.) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

James CockramJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom james.cockram@niab.com.
Alice ScuderiJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom Department of Drug Science and Products for Health, University of Messina, Sicily, 98122, Italy.
Toby BarberJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom.
Eiko FurukiCentre for Crop Disease Management, Curtin University, WA6845, Australia.
Keith A GardnerJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom.
Nick GosmanJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom.
Radoslaw KowalczykJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom Faculty of Life Sciences, University of Manchester, M13 9PL, United Kingdom.
Huyen P PhanCentre for Crop Disease Management, Curtin University, WA6845, Australia.
Gemma A RoseJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom.
Kar-Chun TanCentre for Crop Disease Management, Curtin University, WA6845, Australia.
Richard P OliverCentre for Crop Disease Management, Curtin University, WA6845, Australia.
Ian J MackayJohn Bingham Laboratory, National Institute of Agricultural Botany (NIAB), Huntington Road, Cambridge, CB3 0LE, United Kingdom.

Funding

Biotechnology and Biological Sciences Research Council BB/E007201/1Biotechnology and Biological Sciences Research Council BB/E007260/1
6 · The paper itself

Abstract

The necrotrophic fungus Parastagonospora nodorum is an important pathogen of one of the world's most economically important cereal crops, wheat (Triticum aestivum L.). P. nodorum produces necrotrophic protein effectors that mediate host cell death, providing nutrients for continuation of the infection process. The recent discovery of pathogen effectors has revolutionized disease resistance breeding for necrotrophic diseases in crop species, allowing often complex genetic resistance mechanisms to be broken down into constituent parts. To date, three effectors have been identified in P. nodorum. Here we use the effector, SnTox1, to screen 642 progeny from an eight-parent multiparent advanced generation inter-cross (i.e., MAGIC) population, genotyped with a 90,000-feature single-nucleotide polymorphism array. The MAGIC founders showed a range of sensitivity to SnTox1, with transgressive segregation evident in the progeny. SnTox1 sensitivity showed high heritability, with quantitative trait locus analyses fine-mapping the Snn1 locus to the short arm of chromosome 1B. In addition, a previously undescribed SnTox1 sensitivity locus was identified on the long arm of chromosome 5A, termed here QSnn.niab-5A.1. The peak single-nucleotide polymorphism for the Snn1 locus was converted to the KASP genotyping platform, providing breeders and researchers a simple and cheap diagnostic marker for allelic state at Snn1.

Indexed as

Genetic LociHybridization, GeneticAscomycotaChromosomes, PlantDisease ResistanceGenetic LinkageMycotoxinsPolymorphism, Single NucleotideTriticumMycotoxinsdiagnostic genetic markersfungal protein effectorshigh-density crop genotypingMPPMultiparent Advanced Generation Inter-Cross (MAGIC)multiparental populationsmultiparent genetic mapping populationsplant disease resistance breeding

Identifiers

PMID26416667
PMCPMC4632045

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.