Evidence map›Paper›PMID 26416482›Full record

ArticleGenetics2015

The Abundant Histone Chaperones Spt6 and FACT Collaborate to Assemble, Inspect, and Maintain Chromatin Structure in Saccharomyces cerevisiae.

Laura McCullough, Zaily Connell, Charisse Petersen, Tim Formosa

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 73 citations in OpenAlex.

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  10. Toward structural understanding of eukaryotic transcription elongation.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Laura McCulloughDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112.
Zaily ConnellDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112.
Charisse PetersenDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112.
Tim FormosaDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112 tim@biochem.utah.edu.ORCID http://orcid.org/0000-0002-8477-2483
University of Utah · US

Funding

Biochemical, Genetic, and Genomic Analysis of Nucleosome Reorganization by FACTR01GM064649 · NIGMS · UNIVERSITY OF UTAH · PI FORMOSA, TIMOTHY G · 2002 to 2022
$6.4M
NIGMS NIH HHS GM-064649NIGMS NIH HHS R01 GM064649
6 · The paper itself

Abstract

Saccharomyces cerevisiae Spt6 protein is a conserved chromatin factor with several distinct functional domains, including a natively unstructured 30-residue N-terminal region that binds competitively with Spn1 or nucleosomes. To uncover physiological roles of these interactions, we isolated histone mutations that suppress defects caused by weakening Spt6:Spn1 binding with the spt6-F249K mutation. The strongest suppressor was H2A-N39K, which perturbs the point of contact between the two H2A-H2B dimers in an assembled nucleosome. Substantial suppression also was observed when the H2A-H2B interface with H3-H4 was altered, and many members of this class of mutations also suppressed a defect in another essential histone chaperone, FACT. Spt6 is best known as an H3-H4 chaperone, but we found that it binds with similar affinity to H2A-H2B or H3-H4. Like FACT, Spt6 is therefore capable of binding each of the individual components of a nucleosome, but unlike FACT, Spt6 did not produce endonuclease-sensitive reorganized nucleosomes and did not displace H2A-H2B dimers from nucleosomes. Spt6 and FACT therefore have distinct activities, but defects can be suppressed by overlapping histone mutations. We also found that Spt6 and FACT together are nearly as abundant as nucleosomes, with ∼24,000 Spt6 molecules, ∼42,000 FACT molecules, and ∼75,000 nucleosomes per cell. Histone mutations that destabilize interfaces within nucleosomes therefore reveal multiple spatial regions that have both common and distinct roles in the functions of these two essential and abundant histone chaperones. We discuss these observations in terms of different potential roles for chaperones in both promoting the assembly of nucleosomes and monitoring their quality.

Indexed as

ChromatinChromosome MappingDNA-Binding ProteinsHigh Mobility Group ProteinsHistone ChaperonesHistonesMultiprotein ComplexesNucleosomesProtein BindingProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSuppression, GeneticTranscriptional Elongation FactorsTranscription FactorsChromatinDNA-Binding ProteinsFACT protein, S cerevisiaeHigh Mobility Group ProteinsHistone ChaperonesHistonesMultiprotein ComplexesNucleosomesPOB3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSPT16 protein, S cerevisiaeSPT6 protein, S cerevisiaeTranscriptional Elongation FactorsTranscription FactorsFACThistone chaperonesnucleosome reorganizationSpt6

Identifiers

PMID26416482
PMCPMC4649633
OpenAlexW2257945489

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.