ArticleBioinformatics (Oxford, England)2016
Cytoscape.js: a graph theory library for visualisation and analysis.
Article in Bioinformatics (Oxford, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 365 papers, 2 of them syntheses that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
365 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Systematic reviews of convalescent plasma in COVID-19 continue to be poorly conducted and reported: a systematic review.Journal of clinical epidemiology · 2022Pooled it
- Pooled it
- Drug Design Studio (DDS) 2.0: A Unified Platform for Network Pharmacology Integrated with Docking and Virtual Screening Workflow for Covalent/Non-Covalent Binders.International journal of molecular sciences · 2026Article
- SeqUIaSCOPE: multi-omics data integration platform for single-patient clinical oncology pathway exploration.Bioinformatics (Oxford, England) · 2026Article
- Decoding cytarabine-induced damage in the prepubertal testis: A multi-omics atlas of ecosystem and inheritance.iScience · 2026Article
- Semantically Constrained Detection of Systemic Archetype-Inspired Patterns in Idiographic Case Formulations: A Rule-Based Framework Using FCM-FRHP Functional Semantics.European journal of investigation in health, psychology and education · 2026Article
- A susceptibility network analysis of disease trajectories leading to multiple sclerosis: A nationwide cohort study.Multiple sclerosis (Houndmills, Basingstoke, England) · 2026Article
- PairMap2: A Web Application for Intermediate-Molecule Insertion in Relative Binding Free Energy Calculations.Molecular informatics · 2026Article
- Molecular insights into avocado grafting: the role of chitinase-like genes.Plant physiology · 2026Article
- A cross-cultural ethnobotanical assembly highlights diverse health-promoting functions of genusChinese herbal medicines · 2026Article
- Peanut genome resource: a functional genomics platform for Arachis hypogaea.Plant & cell physiology · 2026Article
- Review
- Unique molecular profiling of monocyte responses to a high dose of DENV-NS1 reflected the effect of NS1 on hemostasis.Medical microbiology and immunology · 2026Article
- DUSP12 promotes cell cycle progression and protects cells from ZNF622 mediated apoptosis.Cell death & disease · 2026Article
- Network pharmacology and molecular docking analysis on mechanisms of Euphorbia Lathyris L. seed in treating colorectal cancer.BMC cancer · 2026Article
- Abundance-activity decoupling in sulfur-cycling bacteria reflects viral infection types in meromictic lakes.The ISME journal · 2026Article
- PGDD 2.0: Plant Genome Duplication Database with updated content and tools.Nucleic acids research · 2026Article
- MicrobeTrace 2.0: the enhanced visualization multitool for molecular epidemiology and bioinformatics.Molecular biology and evolution · 2026Article
- eVGeMdb: a manually curated database for experimentally validated genetic modifiers of neurodegenerative disorders.NAR molecular medicine · 2026Article
- Integrative Metabolic-Flux Platform for Analysis, Contextualization, and Targeting (IMPACT): bridging untargeted and targeted flux analysis.Bioinformatics (Oxford, England) · 2025Article
305 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
unlabelledCytoscape.js is an open-source JavaScript-based graph library. Its most common use case is as a visualization software component, so it can be used to render interactive graphs in a web browser. It also can be used in a headless manner, useful for graph operations on a server, such as Node.js. AVAILABILITY AND IMPLEMENTATION: Cytoscape.js is implemented in JavaScript. Documentation, downloads and source code are available at http://js.cytoscape.org. CONTACT: gary.bader@utoronto.ca.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.