Evidence map›Paper›PMID 26415585›Full record

ArticleNature communications2015

Genomic analyses reveal recurrent mutations in epigenetic modifiers and the JAK-STAT pathway in Sézary syndrome.

Mark J Kiel, Anagh A Sahasrabuddhe, Delphine C M Rolland, Thirunavukkarasu Velusamy, Fuzon Chung, Matthew Schaller, Nathanael G Bailey, Bryan L Betz, Roberto N Miranda, Pierluigi Porcu and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
19.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 200 citations in OpenAlex.

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  15. RuBi-Ruxolitinib: A Photoreleasable Antitumor JAK Inhibitor.Journal of the American Chemical Society · 2024
    Article
  16. Article
  17. TCR Pathway Mutations in Mature T Cell Lymphomas.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
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55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Mark J KielDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Anagh A SahasrabuddheDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Delphine C M RollandDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine at University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Thirunavukkarasu VelusamyDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Fuzon ChungDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Matthew SchallerDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Nathanael G BaileyDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.ORCID http://orcid.org/0000-0002-6747-680X
Bryan L BetzDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Roberto N MirandaDepartment of Hematopathology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.
Pierluigi PorcuDivision of Hematology, Department of Internal Medicine, The Ohio State University, Columbus, Ohio 43210, USA.ORCID http://orcid.org/0000-0002-8056-023X
John C ByrdDivision of Hematology, Department of Internal Medicine, The Ohio State University, Columbus, Ohio 43210, USA.
L Jeffrey MedeirosDepartment of Hematopathology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.
Steven L KunkelDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
David W BahlerDepartment of Pathology, The University of Utah Health Sciences Center, Salt Lake City, Utah 84112, USA.
Megan S LimDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine at University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Kojo S J Elenitoba-JohnsonDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine at University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
University of Michigan · USUniversity of Pennsylvania · USThe Ohio State University · USThe University of Texas MD Anderson Cancer Center · USUniversity of Utah · US

Funding

Cytokine-induced epigenetic changes during chronic lung diseaseR01HL112897 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DOU, YALI, KUNKEL, STEVEN LYNN · 2013 to 2016
$2.2M
Proteomic analysis of api2-MALT1 positive gastric MALT lymphomaR01CA136905 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELENITOBA-JOHNSON, KOJO S. J. · 2009 to 2013
$1.4M
NCI NIH HHS CA14806NCI NIH HHS R01 CA136905NHLBI NIH HHS R01 HL112897
6 · The paper itself

Abstract

Sézary syndrome (SS) is an aggressive leukaemia of mature T cells with poor prognosis and limited options for targeted therapies. The comprehensive genetic alterations underlying the pathogenesis of SS are unknown. Here we integrate whole-genome sequencing (n=6), whole-exome sequencing (n=66) and array comparative genomic hybridization-based copy-number analysis (n=80) of primary SS samples. We identify previously unknown recurrent loss-of-function aberrations targeting members of the chromatin remodelling/histone modification and trithorax families, including ARID1A in which functional loss from nonsense and frameshift mutations and/or targeted deletions is observed in 40.3% of SS genomes. We also identify recurrent gain-of-function mutations targeting PLCG1 (9%) and JAK1, JAK3, STAT3 and STAT5B (JAK/STAT total ∼11%). Functional studies reveal sensitivity of JAK1-mutated primary SS cells to JAK inhibitor treatment. These results highlight the complex genomic landscape of SS and a role for inhibition of JAK/STAT pathways for the treatment of SS.

Indexed as

CARD Signaling Adaptor ProteinsCell Cycle ProteinsDNA-Binding ProteinsDNA Copy Number VariationsDNA Mutational AnalysisEpigenesis, GeneticExomeGenomicsGuanylate CyclaseHumansJanus KinasesJumonji Domain-Containing Histone DemethylasesJurkat CellsMultigene FamilyNeoplasm ProteinsPhospholipase C gammaCARD11 protein, humanCARD Signaling Adaptor ProteinsCell Cycle ProteinsDNA-Binding ProteinsGuanylate CyclaseJanus KinasesJumonji Domain-Containing Histone DemethylasesKDM6B protein, humanKMT2D protein, humanNeoplasm ProteinsPhospholipase C gammaPLCG1 protein, humanras ProteinsSTAT Transcription Factors

Identifiers

PMID26415585
PMCPMC4598843
OpenAlexW2271138696

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.