Evidence map›Paper›PMID 26415226›Full record

ArticleOncotarget2015

Next generation sequencing in synovial sarcoma reveals novel gene mutations.

Myrella Vlenterie, Melissa H S Hillebrandt-Roeffen, Uta E Flucke, Patricia J T A Groenen, Bastiaan B J Tops, Eveline J Kamping, Rolph Pfundt, Diederik R H de Bruijn, Ad H M Geurts van Kessel, Han J H J M van Krieken and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Relapsed Synovial Sarcoma: Treatment Options.Current treatment options in oncology · 2023
    Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. The clear cell sarcoma functional genomic landscape.The Journal of clinical investigation · 2021
    Article
  16. Article
  17. Review
  18. The epigenomics of sarcoma.Nature reviews. Cancer · 2020
    Review
  19. RNF213 suppresses carcinogenesis in glioblastoma by affecting MAPK/JNK signaling pathway.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2020
    Article
  20. BRAF V600E mutation is a potential therapeutic target for a small subset of synovial sarcoma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Myrella VlenterieDepartment of Medical Oncology, Radboud University Medical Center, Nijmegen, The Netherlands.
Melissa H S Hillebrandt-RoeffenDepartment of Medical Oncology, Radboud University Medical Center, Nijmegen, The Netherlands.
Uta E FluckeDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Patricia J T A GroenenDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Bastiaan B J TopsDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Eveline J KampingDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Rolph PfundtDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Diederik R H de BruijnDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Ad H M Geurts van KesselDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Han J H J M van KriekenDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Winette T A van der GraafDepartment of Medical Oncology, Radboud University Medical Center, Nijmegen, The Netherlands.
Yvonne M H Versleijen-JonkersDepartment of Medical Oncology, Radboud University Medical Center, Nijmegen, The Netherlands.
Radboud University Nijmegen · NLRadboud University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over 95% of all synovial sarcomas (SS) share a unique translocation, t(X;18), however, they show heterogeneous clinical behavior. We analyzed multiple SS to reveal additional genetic alterations besides the translocation. Twenty-six SS from 22 patients were sequenced for 409 cancer-related genes using the Comprehensive Cancer Panel (Life Technologies, USA) on an Ion Torrent platform. The detected variants were verified by Sanger sequencing and compared to matched normal DNAs. Copy number variation was assessed in six tumors using the Oncoscan array (Affymetrix, USA). In total, eight somatic mutations were detected in eight samples. These mutations have not been reported previously in SS. Two of these, in KRAS and CCND1, represent known oncogenic mutations in other malignancies. Additional mutations were detected in RNF213, SEPT9, KDR, CSMD3, MLH1 and ERBB4. DNA alterations occurred more often in adult tumors. A distinctive loss of 6q was found in a metastatic lesion progressing under pazopanib, but not in the responding lesion. Our results emphasize t(X;18) as a single initiating event in SS and as the main oncogenic driver. Our results also show the occurrence of additional genetic events, mutations or chromosomal aberrations, occurring more frequently in SS with an onset in adults.

Indexed as

DNA Mutational AnalysisHigh-Throughput Nucleotide SequencingAdolescentAdultAgedChildDNA Copy Number VariationsFemaleHumansImmunohistochemistryMaleMiddle AgedMutationSarcoma, SynovialYoung AdultCCND1chromosomal aberrationsKRASnext generation sequencingsynovial sarcoma

Identifiers

PMID26415226
PMCPMC4741482
OpenAlexW2180435523

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.