Evidence map›Paper›PMID 26414697›Full record

ArticleInternational journal of cancer2016

Polymorphisms in genes in the androgen pathway and risk of Barrett's esophagus and esophageal adenocarcinoma.

Weronica E Ek, Katarina Lagergren, Michael Cook, Anna H Wu, Christian C Abnet, David Levine, Wong-Ho Chow, Leslie Bernstein, Harvey A Risch, Nicholas J Shaheen and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 19 institutions in 5 countries.

Weronica E EkDepartment of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Sweden.
Katarina LagergrenUpper Gastrointestinal Surgery, Department of Molecular Medicine and Surgery, Karolinska Institute, Stockholm, Sweden.
Michael CookDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD.
Anna H WuDepartment of Preventive Medicine, University of Southern California/Norris Comprehensive Cancer Center, Los Angeles, CA.
Christian C AbnetDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD.
David LevineDepartment of Biostatistics, University of Washington, Seattle, WA.
Wong-Ho ChowDepartment of Epidemiology, MD Anderson Cancer Center, Houston, TX.
Leslie BernsteinDepartment of Population Sciences, Beckman Research Institute and City of Hope Comprehensive Cancer Center, Duarte, CA.
Harvey A RischYale School of Public Health, New Haven, CT.
Nicholas J ShaheenDivision of Gastroenterology and Hepatology, UNC School of Medicine, University of North Carolina, Chapel Hill, NC.
Nigel C BirdDepartment of Oncology, The Medical School, University of Sheffield, United Kingdom.
Douglas A CorleyDivision of Research, Kaiser Permanente Northern California, Oakland, CA.
Laura J HardieDivision of Epidemiology, University of Leeds, United Kingdom.
Rebecca C FitzgeraldMedical Research Council (MRC) Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, United Kingdom.
Marilie D GammonDepartment of Epidemiology, University of North Carolina at Chapel Hill, NC.
Yvonne RomeroDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN.
Geoffrey LiuDepartments of Medicine, Epidemiology, and Medical Biophysics, Princess Margaret Cancer Centre, Dalla Lana School of Public Health, University of Toronto, Canada.
Weimin YeDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.
Thomas L VaughanDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA.
Stuart MacGregorStatistical Genetics, QIMR Berghofer Medical Research Institute, Herston, QLD, Australia.
David C WhitemanCancer Control Group, QIMR Berghofer Medical Research Institute, Herston, QLD, Australia.
Lars WestbergDepartment of Pharmacology, Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Sweden.
Jesper LagergrenUpper Gastrointestinal Surgery, Department of Molecular Medicine and Surgery, Karolinska Institute, Stockholm, Sweden.
Karolinska Institutet · SEQIMR Berghofer Medical Research Institute · AUUniversity of North Carolina at Chapel Hill · USCity of Hope · USDivision of Cancer Epidemiology and GeneticsFred Hutch Cancer Center · USKaiser Permanente · USMayo Clinic in Arizona · USMRC Cancer Unit · GBNational Cancer Institute · USPrincess Margaret Cancer Centre · CAScience for Life Laboratory · SEThe University of Texas MD Anderson Cancer Center · USUniversity of Gothenburg · SEUniversity of Leeds · GBUniversity of Sheffield · GBUniversity of Southern California · USUniversity of Washington · USYale University · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
PHYLOGENIES of Barrett's Esophagus LineagesP01CA091955 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GRADY, WILLIAM MALLORY · 2002 to 2019
$35.9M
UT M.D. Anderson Cancer Center SPORE in MelanomaP50CA093459 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GRIMM, ELIZABETH A · 2004 to 2014
$23.7M
Barrett's and Esophageal Adenocarcinoma Genetic Susceptibility Study (BEAGESS)R01CA136725 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L, WHITEMAN, DAVID C · 2009 to 2011
$7.8M
Barretts EsophagusZIACP010220 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ABNET, CHRISTIAN · 2011 to 2025
$4.5M
Epidemiology and Incidence of Barrett's EsophagusR01DK063616 · NIDDK · KAISER FOUNDATION RESEARCH INSTITUTE · PI CORLEY, DOUGLAS ALLEN · 2002 to 2010
$2.6M
ESTABLISHED INVESTIGATOR AWARD IN CANCER PREVENTION AND CONTROLK05CA124911 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 2007 to 2016
$1.6M
Genetic Predictors for DNA Repair Phenotype in CMMR01CA100264 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WEI, QINGYI · 2004 to 2008
$1.5M
Molecular epidemiology of Barretts esophagus and cancerR01CA001833 · NCI · QUEENSLAND INSTITUTE OF MEDICAL RESEARCH · PI WHITEMAN, DAVID C · 2002 to 2006
$1.3M
Non-Endoscopic Surveillance for Barrett's Esophagus Following Ablative TherapyK24DK100548 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHAHEEN, NICHOLAS J · 2013 to 2017
$896k
Statistical Methods for Gene Environment Interactions In Lung CancerR01CA133996 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AMOS, CHRISTOPHER I. · 2007 to 2009
$790k
EPIDEMIOLOGY OF BARRETTS ESOPHAGUSR01CA072866 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 1997 to 2000
$543k
Cancer Research UK C490/A10119Cancer Research UK C490/A10124Intramural NIH HHS ZIA CP010220Medical Research Council MC_U105365007NCI NIH HHS K05 CA124911NCI NIH HHS P01 CA091955NCI NIH HHS P01CA091955NCI NIH HHS P30 CA016672NCI NIH HHS P30CA016672NCI NIH HHS P50 CA093459NCI NIH HHS P50CA093459NCI NIH HHS R01 CA001833NCI NIH HHS R01CA001833NCI NIH HHS R01CA057947NCI NIH HHS R01CA059636NCI NIH HHS R01 CA072866NCI NIH HHS R01CA072866NCI NIH HHS R01 CA100264NCI NIH HHS R01CA100264NCI NIH HHS R01 CA133996NCI NIH HHS R01CA133996NCI NIH HHS R01 CA136725NCI NIH HHS R01CA136725NCI NIH HHS U01 CA057923NCI NIH HHS U01CA057923NCI NIH HHS U01 CA057949NCI NIH HHS U01CA057949NCI NIH HHS U01 CA057983NCI NIH HHS U01CA057983NHGRI NIH HHS HHSN268200782096CNIDDK NIH HHS K24 DK100548NIDDK NIH HHS R01 DK063616NIDDK NIH HHS R01DK63616Wellcome TrustWellcome Trust 076113Wellcome Trust 090355
6 · The paper itself

Abstract

The strong male predominance in Barrett's esophagus (BE) and esophageal adenocarcinoma (EAC) remains inadequately explained, but sex hormones might be involved. We hypothesized that single nucleotide polymorphisms (SNPs) in the androgen pathway influence risk of developing BE and EAC. This genetic-epidemiological analysis included 14 studies from Australia, Europe and North America. Polymorphisms in 16 genes coding for the androgen pathway were analyzed using a gene-based approach: versatile gene-based test association study. This method evaluates associations between a trait and all SNPs within a specific gene rather than each SNP marker individually as in a conventional GWAS. The data were stratified for sex, body-mass index, waist-to-hip ratio, tobacco smoking and gastroesophageal reflux status. Included were data from 1,508 EAC patients, 2,383 BE patients and 2,170 control participants. SNPs within the gene CYP17A1 were associated with risk of BE in the sexes combined (p = 0.002) and in males (p = 0.003), but not in females separately (p = 0.3). This association was found in tobacco smokers (p = 0.003) and in BE patients without reflux (p = 0.004), but not in nonsmokers (p = 0.2) or those with reflux (p = 0.036). SNPs within JMJD1C were associated with risk of EAC in females (p = 0.001). However, none of these associations replicated in a subsequent sample. Fourteen other genes studied did not reach statistically significant levels of association with BE, EAC or the combination of BE and EAC, after correcting for the number of genes included in the analysis. In conclusion, genetic variants in the androgen-related genes CYP17A1 and JMJD1C might be associated with risk of BE and EAC, respectively, but replication data with larger sample sizes are needed.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdenocarcinomaAdultAgedBarrett EsophagusEsophageal NeoplasmsFemaleHumansJumonji Domain-Containing Histone DemethylasesMaleMiddle AgedOxidoreductases, N-DemethylatingRiskSteroid 17-alpha-HydroxylaseCYP17A1 protein, humanJMJD1C protein, humanJumonji Domain-Containing Histone DemethylasesOxidoreductases, N-DemethylatingSteroid 17-alpha-HydroxylaseBarrett esophagusesophageal neoplasmsgenome-wide association studygonadal steroid hormonehormonesneoplasm

Identifiers

PMID26414697
PMCPMC4715576
OpenAlexW2130367456

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.