Evidence map›Paper›PMID 26414663›Full record

ArticleAIDS research and human retroviruses2016

HIV-1 Transmitted Drug Resistance Mutations in Newly Diagnosed Antiretroviral-Naive Patients in Turkey.

Murat Sayan, Fatma Sargin, Dilara Inan, Dilek Y Sevgi, Aysel K Celikbas, Kadriye Yasar, Figen Kaptan, Selda Kutlu, Nuriye T Fisgin, Ayse Inci and 10 more

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In one paragraph

Article in AIDS research and human retroviruses, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

Murat Sayan1 Faculty of Medicine, Clinical Laboratory, PCR Unit, University of Kocaeli , Kocaeli, Turkey .
Fatma Sargin3 Goztepe Educational and Research Hospital, Clinic of Infectious Diseases, Medeniyet University , Istanbul, Turkey .
Dilara Inan4 Faculty of Medicine, Department of Infectious Diseases, University of Akdeniz , Antalya, Turkey .
Dilek Y Sevgi5 Educational and Research Hospital, Clinic of Infectious Diseases , Sisli Etfal, Istanbul, Turkey .
Aysel K Celikbas6 Educational and Research Hospital , Clinic of Infectious Diseases, Ankara Numune, Ankara, Turkey .
Kadriye Yasar7 Educational and Research Hospital, Clinic of Infectious Diseases , Bakırkoy Dr. Sadi Konuk, Istanbul, Turkey .
Figen Kaptan8 Educational and Research Hospital, Department of Infectious Diseases, University of Katip Celebi , İzmir, Turkey .
Selda Kutlu9 Faculty of Medicine, Department of Infectious Diseases, University of Pamukkale , Denizli, Turkey .
Nuriye T Fisgin10 Faculty of Medicine, Department of Infectious Diseases, University of 19 Mayıs , Samsun, Turkey .
Ayse Inci11 Educational and Research Hospital, Clinic of Infectious Diseases , Istanbul Kanuni Sultan Süleyman, Istanbul, Turkey .
Nurgul Ceran12 Educational and Research Hospital, Clinic of Infectious Diseases , Haydarpasa Numune, Istanbul, Turkey .
Ilkay Karaoglan13 Faculty of Medicine, Department of Infectious Diseases, University of Gaziantep , Gaziantep, Turkey .
Atahan Cagatay14 Faculty of Medicine, Department of Infectious Diseases, University of Istanbul , Istanbul, Turkey .
Mustafa K Celen15 Faculty of Medicine, Department of Infectious Diseases, University of Dicle , Diyarbakır, Turkey .
Suda T Koruk16 Faculty of Medicine, Department of Infectious Diseases, University of Harran , Urfa, Turkey .
Bahadir Ceylan17 Faculty of Medicine, Department of Infectious Diseases, University of Bezm-i Alem , Istanbul, Turkey .
Taner Yildirmak18 Educational and Research Hospital, Clinic of Infectious Diseases , Istanbul Okmeydani, Istanbul, Turkey .
Halis Akalın19 Faculty of Medicine, Department of Infectious Diseases, University of Uludag , Bursa, Turkey .
Volkan Korten20 Faculty of Medicine, Department of Infectious Diseases, University of Marmara , Istanbul, Turkey .
Ayse Willke21 Faculty of Medicine, Department of Infectious Diseases, University of Kocaeli , Kocaeli, Turkey .
Akdeniz University · TRBursa Uludağ Üni̇versi̇tesi̇ · TRGaziantep University · TRKocaeli Üniversitesi · TRNear East University · CYOndokuz Mayıs University · TRPamukkale University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HIV-1 replication is rapid and highly error-prone. Transmission of a drug-resistant HIV-1 strain is possible and occurs within the HIV-1-infected population. In this study, we aimed to determine the prevalence of transmitted drug resistance mutations (TDRMs) in 1,306 newly diagnosed untreated HIV-1-infected patients from 21 cities across six regions of Turkey between 2010 and 2015. TDRMs were identified according to the criteria provided by the World Health Organization's 2009 list of surveillance drug resistance mutations. The HIV-1 TDRM prevalence was 10.1% (133/1,306) in Turkey. Primary drug resistance mutations (K65R, M184V) and thymidine analogue-associated mutations (TAMs) were evaluated together as nucleos(t)ide reverse transcriptase inhibitor (NRTI) mutations. NRTI TDRMs were found in 8.1% (107/1,306) of patients. However, TAMs were divided into three categories and M41L, L210W, and T215Y mutations were found for TAM1 in 97 (7.4%) patients, D67N, K70R, K219E/Q/N/R, T215F, and T215C/D/S mutations were detected for TAM2 in 52 (3.9%) patients, and M41L + K219N and M41L + T215C/D/S mutations were detected for the TAM1 + TAM2 profile in 22 (1.7%) patients, respectively. Nonnucleoside reverse transcriptase inhibitor-associated TDRMs were detected in 3.3% (44/1,306) of patients (L100I, K101E/P, K103N/S, V179F, Y188H/L/M, Y181I/C, and G190A/E/S) and TDRMs to protease inhibitors were detected in 2.3% (30/1,306) of patients (M46L, I50V, I54V, Q58E, L76V, V82A/C/L/T, N83D, I84V, and L90M). In conclusion, long-term and large-scale monitoring of regional levels of HIV-1 TDRMs informs treatment guidelines and provides feedback on the success of HIV-1 prevention and treatment efforts.

Indexed as

MutationAdultAnti-HIV AgentsCD4 Lymphocyte CountDrug Resistance, ViralFemaleGene ExpressionHIV-1HIV InfectionsHIV ProteaseHIV Protease InhibitorsHIV Reverse TranscriptaseHumansMalePrevalenceReverse Transcriptase InhibitorsAnti-HIV AgentsHIV ProteaseHIV Protease InhibitorsHIV Reverse TranscriptaseReverse Transcriptase InhibitorsRNA, Viral

Identifiers

PMID26414663
PMCPMC4692107
OpenAlexW2165221084

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.