Evidence map›Paper›PMID 26414517›Full record

ArticleThe Journal of pathology2016

Adenoma development in familial adenomatous polyposis and MUTYH-associated polyposis: somatic landscape and driver genes.

Mamunur Rashid, Andrej Fischer, Cathy H Wilson, Jessamy Tiffen, Alistair G Rust, Philip Stevens, Shelley Idziaszczyk, Julie Maynard, Geraint T Williams, Ville Mustonen and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of pathology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 49 citations in OpenAlex.

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  12. Journal of gastrointestinal oncology · 2021
    Article
  13. Diagnostics (Basel, Switzerland) · 2021
    Review
  14. Article
  15. Impact ofMicroorganisms · 2020
    Article
  16. Article
  17. The genomics of oxidative DNA damage, repair, and resulting mutagenesis.Computational and structural biotechnology journal · 2020
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Mamunur RashidExperimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Andrej FischerPopulation Genomics of Adaptation, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Cathy H WilsonExperimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Jessamy TiffenExperimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Alistair G RustExperimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Philip StevensThe Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Shelley IdziaszczykInstitute of Medical Genetics, Cardiff University School of Medicine, UK.
Julie MaynardInstitute of Medical Genetics, Cardiff University School of Medicine, UK.
Geraint T WilliamsInstitute of Medical Genetics, Cardiff University School of Medicine, UK.
Ville MustonenPopulation Genomics of Adaptation, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Julian R SampsonInstitute of Medical Genetics, Cardiff University School of Medicine, UK.
David J AdamsExperimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Wellcome Sanger Institute · GBCardiff University · GBCancer Genetics (United States) · USUniversity of Wales Institute Cardiff · SG

Funding

Cancer Research UK 13031Wellcome Trust
6 · The paper itself

Abstract

Familial adenomatous polyposis (FAP) and MUTYH-associated polyposis (MAP) are inherited disorders associated with multiple colorectal adenomas that lead to a very high risk of colorectal cancer. The somatic mutations that drive adenoma development in these conditions have not been investigated comprehensively. In this study we performed analysis of paired colorectal adenoma and normal tissue DNA from individuals with FAP or MAP, sequencing 14 adenoma whole exomes (eight MAP, six FAP), 55 adenoma targeted exomes (33 MAP, 22 FAP) and germline DNA from each patient, and a further 63 adenomas by capillary sequencing (41 FAP, 22 MAP). With these data we examined the profile of mutated genes, the mutational signatures and the somatic mutation rates, observing significant diversity in the constellations of mutated driver genes in different adenomas, and loss-of-function mutations in WTX (9%; p < 9.99e-06), a gene implicated in regulation of the WNT pathway and p53 acetylation. These data extend our understanding of the early events in colorectal tumourigenesis in the polyposis syndromes.

Indexed as

Adenomatous Polyposis ColiDNA GlycosylasesDNA Mutational AnalysisHumansIntestinal PolyposisNeoplastic Syndromes, HereditaryTranscriptomeDNA GlycosylasesmutY adenine glycosylaseadenoma developmentAPCcolorectal neoplasmsdriver genesexome sequencingMUTYHsomatic landscapeWTX

Identifiers

PMID26414517
PMCPMC4832337
OpenAlexW1910096403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.