Evidence map›Paper›PMID 26414351›Full record

ArticleNature biotechnology2015

Subangstrom single-molecule measurements of motor proteins using a nanopore.

Ian M Derrington, Jonathan M Craig, Eric Stava, Andrew H Laszlo, Brian C Ross, Henry Brinkerhoff, Ian C Nova, Kenji Doering, Benjamin I Tickman, Mostafa Ronaghi and 3 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. The Role of SF1 and SF2 Helicases in Biotechnological Applications.Applied biochemistry and biotechnology · 2024
    Review
  14. Article
  15. Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Ian M DerringtonDepartment of Physics, University of Washington, Seattle, Washington, USA.
Jonathan M CraigDepartment of Physics, University of Washington, Seattle, Washington, USA.
Eric StavaIllumina Inc., San Diego, California, USA.
Andrew H LaszloDepartment of Physics, University of Washington, Seattle, Washington, USA.
Brian C RossDepartment of Physics, University of Washington, Seattle, Washington, USA.
Henry BrinkerhoffDepartment of Physics, University of Washington, Seattle, Washington, USA.ORCID http://orcid.org/0000-0003-2735-8048
Ian C NovaDepartment of Physics, University of Washington, Seattle, Washington, USA.
Kenji DoeringDepartment of Physics, University of Washington, Seattle, Washington, USA.
Benjamin I TickmanDepartment of Physics, University of Washington, Seattle, Washington, USA.
Mostafa RonaghiIllumina Inc., San Diego, California, USA.
Jeffrey G MandellIllumina Inc., San Diego, California, USA.
Kevin L GundersonIllumina Inc., San Diego, California, USA.
Jens H GundlachDepartment of Physics, University of Washington, Seattle, Washington, USA.

Funding

Nanopore sequencing of DNA with MspAR01HG005115 · NHGRI · UNIVERSITY OF WASHINGTON · PI GUNDLACH, JENS, LASZLO, ANDREW · 2009 to 2024
$14.0M
NHGRI NIH HHS R01 HG005115NHGRI NIH HHS R01HG005115
6 · The paper itself

Abstract

Techniques for measuring the motion of single motor proteins, such as FRET and optical tweezers, are limited to a resolution of ∼300 pm. We use ion current modulation through the protein nanopore MspA to observe translocation of helicase Hel308 on DNA with up to ∼40 pm sensitivity. This approach should be applicable to any protein that translocates on DNA or RNA, including helicases, polymerases, recombinases and DNA repair enzymes.

Indexed as

DNADNA HelicasesElastic ModulusMaterials TestingMicromanipulationMolecular Motor ProteinsMotionNanoporesNanotechnologyProtein BindingStress, MechanicalDNADNA HelicasesMolecular Motor Proteins

Identifiers

PMID26414351
PMCPMC4915380

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.