Evidence map›Paper›PMID 26412856›Full record

ArticleGenome biology and evolution2015

Different Ancestries of R Tailocins in Rhizospheric Pseudomonas Isolates.

Maarten G K Ghequire, Yörg Dillen, Ivo Lambrichts, Paul Proost, Ruddy Wattiez, René De Mot

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Article
  9. Review
  10. Applied and environmental microbiology · 2024
    Article
  11. Article
  12. Pantailocins: phage-derived bacteriocins fromApplied and environmental microbiology · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Journal of bacteriology · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Maarten G K GhequireCentre of Microbial and Plant Genetics (CMPG), University of Leuven, Heverlee, Belgium maarten.ghequire@biw.kuleuven.be.
Yörg DillenGroup of Morphology, Biomedical Research Institute (BIOMED), Hasselt University, Diepenbeek, Leuven, Belgium.
Ivo LambrichtsGroup of Morphology, Biomedical Research Institute (BIOMED), Hasselt University, Diepenbeek, Leuven, Belgium.
Paul ProostLaboratory of Molecular Immunology, Department of Microbiology and Immunology, Rega Institute, University of Leuven, Belgium.
Ruddy WattiezProteomics and Microbiology Laboratory, Research Institute for Biosciences, University of Mons, Mons, Belgium.
René De MotCentre of Microbial and Plant Genetics (CMPG), University of Leuven, Heverlee, Belgium.
KU Leuven · BEHasselt University · BEUniversity of Mons · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial genomes accommodate a variety of mobile genetic elements, including bacteriophage-related clusters that encode phage tail-like protein complexes playing a role in interactions with eukaryotic or prokaryotic cells. Such tailocins are unable to replicate inside target cells due to the lack of a phage head with associated DNA. A subset of tailocins mediate antagonistic activities with bacteriocin-like specificity. Functional characterization of bactericidal tailocins of two Pseudomonas putida rhizosphere isolates revealed not only extensive similarity with the tail assembly module of the Pseudomonas aeruginosa R-type pyocins but also differences in genomic integration site, regulatory genes, and lytic release modules. Conversely, these three features are quite similar between strains of the P. putida and Pseudomonas fluorescens clades, although phylogenetic analysis of tail genes suggests them to have evolved separately. Unlike P. aeruginosa R pyocin elements, the tailocin gene clusters of other pseudomonads frequently carry cargo genes, including bacteriocins. Compared with P. aeruginosa, the tailocin tail fiber sequences that act as specificity determinants have diverged much more extensively among the other pseudomonad species, mostly isolates from soil and plant environments. Activity of the P. putida antibacterial particles requires a functional lipopolysaccharide layer on target cells, but contrary to R pyocins from P. aeruginosa, strain susceptibilities surpass species boundaries.

Indexed as

BacteriocinsGenome, BacterialInterspersed Repetitive SequencesMicroscopy, Electron, TransmissionMolecular Sequence DataMultigene FamilyMusaMutationOryzaPhylogenyPseudomonas PhagesPseudomonas putidaPyocinsSequence Analysis, ProteinSilver StainingBacteriocinsPyocinsantibacterialbacteriocinphage tailpyocin

Identifiers

PMID26412856
PMCPMC4684702
OpenAlexW2184944604

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.