Evidence map›Paper›PMID 26411495›Full record

ArticleAmerican journal of human genetics2015

Biallelic Mutations in Nuclear Pore Complex Subunit NUP107 Cause Early-Childhood-Onset Steroid-Resistant Nephrotic Syndrome.

Noriko Miyake, Hiroyasu Tsukaguchi, Eriko Koshimizu, Akemi Shono, Satoko Matsunaga, Masaaki Shiina, Yasuhiro Mimura, Shintaro Imamura, Tomonori Hirose, Koji Okudela and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 120 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Nucleoporins cooperate with Polycomb silencers to promote transcriptional repression and repair at DNA double-strand breaks.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  9. Nucleoporin-associated steroid-resistant nephrotic syndrome.Pediatric nephrology (Berlin, Germany) · 2025
    Review
  10. Article
  11. Article
  12. Review
  13. Molecular diagnosis of 405 individuals with autism spectrum disorder.European journal of human genetics : EJHG · 2024
    Article
  14. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  15. Article
  16. Review
  17. Review
  18. Article
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 9 institutions in 2 countries.

Noriko MiyakeDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Hiroyasu TsukaguchiSecond Department of Internal Medicine, Kansai Medical University, Osaka 570-8507, Japan. Electronic address: tsukaguh@hirakata.kmu.ac.jp.
Eriko KoshimizuDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Akemi ShonoDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe 650-0017, Japan.
Satoko MatsunagaDepartment of Microbiology, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Masaaki ShiinaDepartment of Biochemistry, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Yasuhiro MimuraCellular Dynamics Laboratory, RIKEN, Wako 351-0198, Japan.
Shintaro ImamuraNational Research Institute of Fisheries Science, Yokohama 236-8648, Japan.
Tomonori HiroseDepartment of Molecular Biology, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Koji OkudelaDepartment of Pathology, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Kandai NozuDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe 650-0017, Japan.
Yuko AkiokaDepartment of Pediatric Nephrology, Tokyo Women's Medical University, Tokyo 162-8666, Japan.
Motoshi HattoriDepartment of Pediatric Nephrology, Tokyo Women's Medical University, Tokyo 162-8666, Japan.
Norishige YoshikawaCenter for Clinical Research and Development, National Center for Child Health and Development, Tokyo 157-8535, Japan.
Akiko KitamuraDepartment of Immunology & Parasitology, Institute of Biomedical Sciences, Tokushima University Graduate School, Tokushima 770-8503, Japan.
Hae Il CheongDepartment of Pediatrics, Seoul National University Children's Hospital, Seoul 03080, Korea; Research Coordination Center for Rare Diseases, Seoul National University Hospital, Seoul 03080, Korea; Kidney Research Institute, Medical Research Center, Seoul National University College of Medicine, Seoul 03080, Korea.
Shoji KagamiDepartment of Pediatrics, University of Tokushima Graduate School, Tokushima 770-8503, Japan.
Michiaki YamashitaNational Research Institute of Fisheries Science, Yokohama 236-8648, Japan.
Atsushi FujitaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Satoko MiyatakeDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Yoshinori TsurusakiDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Mitsuko NakashimaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Hirotomo SaitsuDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Kenichi OhashiDepartment of Pathology, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Naoko ImamotoCellular Dynamics Laboratory, RIKEN, Wako 351-0198, Japan.
Akihide RyoDepartment of Microbiology, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Kazuhiro OgataDepartment of Biochemistry, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan.
Kazumoto IijimaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe 650-0017, Japan.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama 236-0004, Japan. Electronic address: naomat@yokohama-cu.ac.jp.
Yokohama City University · JPKobe University · JPJapan Fisheries Research and Education Agency · JPRIKEN · JPTokushima University · JPTokyo Women's Medical University · JPKansai Medical University · JPNational Center For Child Health and Development · JPSeoul National University Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nuclear pore complex (NPC) is a huge protein complex embedded in the nuclear envelope. It has central functions in nucleocytoplasmic transport, nuclear framework, and gene regulation. Nucleoporin 107 kDa (NUP107) is a component of the NPC central scaffold and is an essential protein in all eukaryotic cells. Here, we report on biallelic NUP107 mutations in nine affected individuals who are from five unrelated families and show early-onset steroid-resistant nephrotic syndrome (SRNS). These individuals have pathologically focal segmental glomerulosclerosis, a condition that leads to end-stage renal disease with high frequency. NUP107 is ubiquitously expressed, including in glomerular podocytes. Three of four NUP107 mutations detected in the affected individuals hamper NUP107 binding to NUP133 (nucleoporin 133 kDa) and NUP107 incorporation into NPCs in vitro. Zebrafish with nup107 knockdown generated by morpholino oligonucleotides displayed hypoplastic glomerulus structures and abnormal podocyte foot processes, thereby mimicking the pathological changes seen in the kidneys of the SRNS individuals with NUP107 mutations. Considering the unique properties of the podocyte (highly differentiated foot-process architecture and slit membrane and the inability to regenerate), we propose a "podocyte-injury model" as the pathomechanism for SRNS due to biallelic NUP107 mutations.

Indexed as

Age of OnsetAllelesAnimalsCells, CulturedChildChild, PreschoolCytoplasmFemaleHaplotypesHumansImmunoblottingImmunoprecipitationInfantKidneyMaleMicroscopy, FluorescenceNuclear Pore Complex ProteinsNUP107 protein, humanNUP107 protein, zebrafishOligoribonucleotides, AntisenseRNA, MessengerZebrafish Proteins

Identifiers

PMID26411495
PMCPMC4596915
OpenAlexW2100884048

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.