Evidence map›Paper›PMID 26411346›Full record

ArticleHuman mutation2015

Rare Variants in PLD3 Do Not Affect Risk for Early-Onset Alzheimer Disease in a European Consortium Cohort.

Rita Cacace, Tobi Van den Bossche, Sebastiaan Engelborghs, Nathalie Geerts, Annelies Laureys, Lubina Dillen, Caroline Graff, Håkan Thonberg, Huei-Hsin Chiang, Pau Pastor and 33 more

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Case Report: A Homozygous Mutation (p.Y62X) ofFrontiers in aging neuroscience · 2021
    Article
  6. Lipids and Alzheimer's Disease.International journal of molecular sciences · 2020
    Review
  7. Frontiers in neuroscience · 2019
    Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Toward precision medicine in neurological diseases.Annals of translational medicine · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 20 institutions in 8 countries.

Rita CacaceNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Tobi Van den BosscheNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Sebastiaan EngelborghsInstitute Born-Bunge, University of Antwerp, Antwerp, Belgium.
Nathalie GeertsNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Annelies LaureysNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Lubina DillenNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Caroline GraffDepartment of Neurobiology, Care Sciences and Society (NVS), Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Håkan ThonbergDepartment of Neurobiology, Care Sciences and Society (NVS), Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Huei-Hsin ChiangDepartment of Geriatric Medicine, Genetics Unit, Karolinska University Hospital, Stockholm, Sweden.
Pau PastorNeurogenetics Laboratory, Division of Neurosciences, Center for Applied Medical Research, Universidad de Navarra, Pamplona, Spain.
Sara Ortega-CuberoNeurogenetics Laboratory, Division of Neurosciences, Center for Applied Medical Research, Universidad de Navarra, Pamplona, Spain.
Maria A PastorCentro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas (CIBERNED), Instituto de Salud Carlos III, Madrid, Spain.
Janine Diehl-SchmidDepartment of Psychiatry and Psychotherapy, Technische Universität München, München, Germany.
Panagiotis AlexopoulosDepartment of Psychiatry and Psychotherapy, Technische Universität München, München, Germany.
Luisa BenussiMolecular Markers Laboratory, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), Istituto Centro San Giovanni di Dio-Fatebenefratelli, Brescia, Italy.
Roberta GhidoniMolecular Markers Laboratory, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), Istituto Centro San Giovanni di Dio-Fatebenefratelli, Brescia, Italy.
Giuliano BinettiMolecular Markers Laboratory, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), Istituto Centro San Giovanni di Dio-Fatebenefratelli, Brescia, Italy.
Benedetta NacmiasDepartment of Neurosciences, Psychology, Drug Research and Child Health (NEUROFARBA), University of Florence, Florence, Italy.
Sandro SorbiDepartment of Neurosciences, Psychology, Drug Research and Child Health (NEUROFARBA), University of Florence, Florence, Italy.
Raquel Sanchez-ValleAlzheimer's Disease and Other Cognitive Disorders Unit, Neurology Department, Hospital Clínic, Institut d'Investigacions Biomediques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Albert LladóAlzheimer's Disease and Other Cognitive Disorders Unit, Neurology Department, Hospital Clínic, Institut d'Investigacions Biomediques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Ellen GelpiNeurological Tissue Bank of the Biobanc, Hospital Clinic, Institut d'Investigacions Biomediques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Maria Rosário AlmeidaCenter for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal.
Isabel SantanaCenter for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal.
Magda Tsolaki3rd Department of Neurology, Medical School, Aristotle University of Thessaloniki, Makedonia, Greece.
Maria KoutroumaniLaboratory of Biochemistry, Department of Chemistry, Aristotle University of Thessaloniki, Thessaloniki, Greece.
Jordi ClarimonCentro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas (CIBERNED), Instituto de Salud Carlos III, Madrid, Spain.
Alberto LleóCentro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas (CIBERNED), Instituto de Salud Carlos III, Madrid, Spain.
Juan ForteaCentro de Investigación Biomédica en Red de Enfermedades Neurodegenerativas (CIBERNED), Instituto de Salud Carlos III, Madrid, Spain.
Alexandre de MendonçaFaculty of Medicine and Institute of Molecular Medicine, University of Lisbon, Lisbon, Portugal.
Madalena MartinsFaculty of Medicine and Institute of Molecular Medicine, University of Lisbon, Lisbon, Portugal.
Barbara BorroniNeurology Unit, University of Brescia, Brescia, Italy.
Alessandro PadovaniNeurology Unit, University of Brescia, Brescia, Italy.
Radoslav MatejCenter of Clinical Neurosciences, Department of Neurology, First Medical Faculty, Charles University in Prague, Czech Republic.
Zdenek RohanCenter of Clinical Neurosciences, Department of Neurology, First Medical Faculty, Charles University in Prague, Czech Republic.
Mathieu VandenbulckeDepartment of Neurosciences, Faculty of Medicine, KU Leuven, Leuven, Belgium.
Rik VandenbergheDepartment of Neurosciences, Faculty of Medicine, KU Leuven, Leuven, Belgium.
Peter P De DeynInstitute Born-Bunge, University of Antwerp, Antwerp, Belgium.
Patrick CrasInstitute Born-Bunge, University of Antwerp, Antwerp, Belgium.
Julie van der ZeeNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Kristel SleegersNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Christine Van BroeckhovenNeurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, Antwerp, Belgium.
Belgium Neurology (BELNEU) Consortium and the European Early-Onset Dementia (EU EOD) Consortium
University of Antwerp · BEVIB-UAntwerp Center for Molecular Neurology · BEConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESInstituto de Salud Carlos III · ESAristotle University of Thessaloniki · GRCentro San Giovanni di Dio Fatebenefratelli · ITCharles University · CZKarolinska University Hospital · SEKU Leuven · BETechnical University of Munich · DEUniversity of Brescia · ITUniversity of Coimbra · PTUniversity of Florence · ITUniversity of Lisbon · PTAntwerp University Hospital · BEBiomedical Research Networking Center on Neurodegenerative Diseases · ESHospital de Sant Pau · ESIstituti di Ricovero e Cura a Carattere Scientifico · ITKarolinska Institutet · SEUniversidad de Navarra · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rare variants in the phospholipase D3 gene (PLD3) were associated with increased risk for late-onset Alzheimer disease (LOAD). We identified a missense mutation in PLD3 in whole-genome sequence data of a patient with autopsy confirmed Alzheimer disease (AD) and onset age of 50 years. Subsequently, we sequenced PLD3 in a Belgian early-onset Alzheimer disease (EOAD) patient (N = 261) and control (N = 319) cohort, as well as in European EOAD patients (N = 946) and control individuals (N = 1,209) ascertained in different European countries. Overall, we identified 22 rare variants with a minor allele frequency <1%, 20 missense and two splicing mutations. Burden analysis did not provide significant evidence for an enrichment of rare PLD3 variants in EOAD patients in any of the patient/control cohorts. Also, meta-analysis of the PLD3 data, including a published dataset of a German EOAD cohort, was not significant (P = 0.43; OR = 1.53, 95% CI 0.60-3.31). Consequently, our data do not support a role for PLD3 rare variants in the genetic etiology of EOAD in European EOAD patients. Our data corroborate the negative replication data obtained in LOAD studies and therefore a genetic role of PLD3 in AD remains to be demonstrated.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationAdultAgedAge of OnsetAllelesAlternative SplicingAlzheimer DiseaseCase-Control StudiesCohort StudiesEuropeExodeoxyribonucleasesExomeHigh-Throughput Nucleotide SequencingHumansMeta-Analysis as TopicExodeoxyribonucleasesPhospholipase DPLD3 protein, humanAlzheimer dementiaEOADmeta-analysisnext-generation sequencingPLD3rare variants

Identifiers

PMID26411346
PMCPMC5057316
OpenAlexW2110241845

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.